View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_high_37 (Length: 294)

Name: NF15659_high_37
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_high_37
NF15659_high_37
[»] chr4 (3 HSPs)
chr4 (1-278)||(2897091-2897368)
chr4 (2-208)||(2887009-2887211)
chr4 (2-201)||(2877242-2877441)
[»] chr2 (3 HSPs)
chr2 (30-170)||(44233943-44234083)
chr2 (30-170)||(44223121-44223261)
chr2 (30-170)||(44210959-44211099)
[»] chr7 (11 HSPs)
chr7 (30-103)||(39338737-39338810)
chr7 (30-130)||(39589312-39589412)
chr7 (30-103)||(39353580-39353653)
chr7 (30-103)||(39366090-39366163)
chr7 (30-103)||(39564290-39564363)
chr7 (60-103)||(39547511-39547554)
chr7 (53-103)||(42171840-42171890)
chr7 (39-103)||(42133047-42133111)
chr7 (60-103)||(39538053-39538096)
chr7 (46-115)||(1084835-1084904)
chr7 (30-115)||(39575089-39575174)
[»] chr3 (1 HSPs)
chr3 (30-103)||(49773225-49773298)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 2897368 - 2897091
Alignment:
Q  1 ccataaaaatttcaggctaccttaaaagacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2897368 ccataaaaatttcaggctaccttaaaagacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtcta 2897269  T
Q  101 tgagtcattggtctactcggcctggcttcgtttactagcagaagttgattccaattccagaaaggttagtatttaaagctcaagacactttgtgattttt 200  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2897268 tgagtcaatggtctactcggcctggcttcgtttaccagcagaagttgattccaattccagaaaggttagtatttaaagctcaagacactttgtgattttt 2897169  T
Q  201 ctgttttttactagattcattcatttagatattcattcattgagacatctggaattcggaacatagactattttttca 278  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2897168 ctgttttttactagattcattgatttagatattcattcattgagacatctggaattcggaacatagactatttgttca 2897091  T

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Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 2887009 - 2887211
Alignment:
Q  2 cataaaaatttcaggctaccttaaaagacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctat 101  Q
    |||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887009 cataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctat 2887108  T
Q  102 gagtcattggtctactcggcctggcttcgtttactagcagaagttgattccaattccagaaaggttagtatttaaagctcaagacactttgtgatttttc 201  Q
    |||||| ||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||| |||||||||| ||||||||||    |||||||||    
T  2887109 gagtcactggtctactcggcctggcttcgtttaccagcagacgttgattcaaataccagaaaggtaagtatttaaaactcaagacac----tgatttttc 2887204  T
Q  202 tgttttt 208  Q
    |||||||    
T  2887205 tgttttt 2887211  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 2877242 - 2877441
Alignment:
Q  2 cataaaaatttcaggctaccttaaaagacaagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctat 101  Q
    |||||||||||| || |||| |||||  |||||||| |||||| |||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||    
T  2877242 cataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctat 2877341  T
Q  102 gagtcattggtctactcggcctggcttcgtttactagcagaagttgattccaattccagaaaggttagtatttaaagctcaagacactttgtgatttttc 201  Q
    ||||| ||  | || || || |||||||||||||  |||||||||||||||||| |||||||||||||||||||  |||| |||||| || | |||||||    
T  2877342 gagtccttactgtattcagcttggcttcgtttaccggcagaagttgattccaataccagaaaggttagtatttactgctccagacaccttatcatttttc 2877441  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 44234083 - 44233943
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcattggtctactcggcctggcttc 129  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||| | ||||| || |||||||    
T  44234083 caagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcagcgtggcttc 44233984  T
Q  130 gtttactagcagaagttgattccaattccagaaaggttagt 170  Q
    ||||||   ||| ||||||||||||  ||||||||||||||    
T  44233983 gtttaccttcaggagttgattccaacaccagaaaggttagt 44233943  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 44223261 - 44223121
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcattggtctactcggcctggcttc 129  Q
    |||||||| |||||| |||| ||||| || ||||||||||||||||||||||| || |||||||| || |||||||| ||| | || ||||| |||||||    
T  44223261 caagaaacatttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttacagtttatgagtctttgctttattcggcgtggcttc 44223162  T
Q  130 gtttactagcagaagttgattccaattccagaaaggttagt 170  Q
    ||||||   ||| ||||||||||||  ||||||||||||||    
T  44223161 gtttaccttcaggagttgattccaacaccagaaaggttagt 44223121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 44211099 - 44210959
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcattggtctactcggcctggcttc 129  Q
    |||||||| |||||| |||| ||||| || ||||| ||||||||||| ||||| ||||||||||| || ||||| ||  |  | ||||| || |||||||    
T  44211099 caagaaacatttgctagaatatctggctactgtgaacagaatgatattcattcacctcatgttacagtttatgaatcccttctttactcagcatggcttc 44211000  T
Q  130 gtttactagcagaagttgattccaattccagaaaggttagt 170  Q
    ||||||   | | ||||||||||||| | ||||||||||||    
T  44210999 gtttaccttctggagttgattccaatactagaaaggttagt 44210959  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39338737 - 39338810
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||||| |||||  |||| ||||| || |||||||| | |||||||||||||||||||||||||||||||||    
T  39338737 caagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcctcatgttactgtctatga 39338810  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 39589412 - 39589312
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcattggtctactcggcctggcttc 129  Q
    |||||||| |||||  |||| ||||| || |||||||| ||||||||||| ||||||||||||||||| ||||| || ||| |||| || || |||||||    
T  39589412 caagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcctcatgttactgtatatgaatctttgctctattcagcatggcttc 39589313  T
Q  130 g 130  Q
    |    
T  39589312 g 39589312  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39353580 - 39353653
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||||| |||||  |||| ||||| || |||||||| | |||||||||||||||| ||||||||||||||||    
T  39353580 caagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctccttatgttactgtctatga 39353653  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39366090 - 39366163
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||||| |||||  |||| ||||| || || ||||| | |||||||||||||||||||||||||||||||||    
T  39366090 caagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcctcatgttactgtctatga 39366163  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 39564363 - 39564290
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||||| |||||  |||| ||||| || |||||||| ||||||||||| |||||| ||||||||||||||||    
T  39564363 caagaaacctttgcaagaatttctgggtactgtgagcaaaatgatatccactctccttatgttactgtctatga 39564290  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 39547554 - 39547511
Alignment:
Q  60 tgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||||| | |||||||||||||||||||||||||||||||||    
T  39547554 tgtgagcaaactgatatccattctcctcatgttactgtctatga 39547511  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 42171890 - 42171840
Alignment:
Q  53 tggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||| || || ||||||||||| ||||||||||||||||||||||||||    
T  42171890 tggttactgcgaacagaatgatattcattctcctcatgttactgtctatga 42171840  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 42133111 - 42133047
Alignment:
Q  39 tttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    ||||||||| ||  ||||||||||||||| |||||||| ||||||||  |||| |||||||||||    
T  42133111 tttgctcgagtcagtggttattgtgagcaaaatgatattcattctccctatgtaactgtctatga 42133047  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 39538096 - 39538053
Alignment:
Q  60 tgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||||| | |||||||||||||||| ||||||||||||||||    
T  39538096 tgtgagcaaactgatatccattctccttatgttactgtctatga 39538053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 1084904 - 1084835
Alignment:
Q  46 gaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcattggtcta 115  Q
    |||| ||||| || |||||||| |  |||||||||||||||||| |||||||||| ||||| ||| ||||    
T  1084904 gaatttctggatactgtgagcaaatagatatccattctcctcattttactgtctacgagtctttgctcta 1084835  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 39575174 - 39575089
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcattggtcta 115  Q
    |||||||| |||||  |||| || || || |||||||| |||||||| || ||||||||| |||| ||||||||||| ||| ||||    
T  39575174 caagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcctcatattacggtctatgagtctttgctcta 39575089  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 49773225 - 49773298
Alignment:
Q  30 caagaaacgtttgctcgaatctctggttattgtgagcagaatgatatccattctcctcatgttactgtctatga 103  Q
    |||||||| ||| |||| || || || || |||||||| | ||||||||| ||||| |||||||||||||||||    
T  49773225 caagaaacattttctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga 49773298  T

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