View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_38 (Length: 293)
Name: NF15659_high_38
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 7952718 - 7952996
Alignment:
| Q |
1 |
tcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacag |
100 |
Q |
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| T |
7952718 |
tcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacag |
7952817 |
T |
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| Q |
101 |
catgaagttcttgttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
200 |
Q |
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| T |
7952818 |
catgaagttcttgttcatgttcatgttgcttggttgaggatgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
7952917 |
T |
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| Q |
201 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagag |
279 |
Q |
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| T |
7952918 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaagagag |
7952996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7936784 - 7937051
Alignment:
| Q |
1 |
tcatcacaagaagatctatccaccagctcctgaaacacaggatgttgaatgacatcggagttcacgaggtattgtcgccgcgactttccgacatagacag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7936784 |
tcatcacaagaagatctatccactagctcctgaaacacagggtgttgaacaacattggagttcacaaggtattgtcgccgcgactttccgacatagacag |
7936883 |
T |
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| Q |
101 |
catgaagttcttgttcttgttcatgttgcttggttgaggctgagacagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
200 |
Q |
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| T |
7936884 |
catgaagctcttgttcttgtt------gcttggaggaggaagagatagagctattgttgcggctgagtttggttaatgaaggccatcttttgatagctga |
7936977 |
T |
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| Q |
201 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaaatgaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7936978 |
cttaagctttgttaattttccaagtttggccattttggtgaaagtgtttgatgaatgtctcaatgaaaagtgaa |
7937051 |
T |
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