View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_46 (Length: 263)
Name: NF15659_high_46
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 2897453 - 2897680
Alignment:
| Q |
18 |
ctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatac |
117 |
Q |
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| T |
2897453 |
ctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatac |
2897552 |
T |
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| Q |
118 |
tcaatagttaaggttcaaagttaactgaaaacattgtttgaaaatcaaatcttcaattataacttactttgaaaatgacttacctgtggcatgtcaacag |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2897553 |
tcaatagttaaggttcaaagttaactgaacacattgtttgaaaatcaaatcttcaattataacttactttgaaaatgacttacctgtggcatgtcaactg |
2897652 |
T |
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| Q |
218 |
aatatataacttggtcaaaggttataga |
245 |
Q |
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|||||| ||||||||||||| ||||||| |
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| T |
2897653 |
aatatacaacttggtcaaagattataga |
2897680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 2886923 - 2886694
Alignment:
| Q |
18 |
ctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatac |
117 |
Q |
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| T |
2886923 |
ctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctagtaccccttgaaccttcatttcctgccaattagaatc |
2886824 |
T |
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| Q |
118 |
tcaatagttaaggttcaaagttaactgaaaacattgtttgaaaatcaaatcttcaattataacttactttgaaaa--tgacttacctgtggcatgtcaac |
215 |
Q |
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| T |
2886823 |
tcaagagttaaggtccaaagttaactaaaaacattgtttgaaaaccaaatcttaaattgtaaaaaacttttataatctcacttacctgtggcatgtcaac |
2886724 |
T |
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| Q |
216 |
agaatatataacttggtcaaaggttataga |
245 |
Q |
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| T |
2886723 |
agaatatacaacatcgtcaaaggctataga |
2886694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 2877156 - 2877069
Alignment:
| Q |
18 |
ctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg |
105 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| | ||||||||||| |
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| T |
2877156 |
ctgtgagaacaccaggtctaaatgcaccactaactcccttcaaaagcactagcctatcctctatcacaccttgatctttcatttcctg |
2877069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 44223375 - 44223462
Alignment:
| Q |
18 |
ctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg |
105 |
Q |
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| T |
44223375 |
ctgtgagaacaccgggcctgaatgcaccactaacacccttcaaaagcactaatctgtcttctctaacaccttgctccttcatttcctg |
44223462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 44211213 - 44211300
Alignment:
| Q |
18 |
ctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg |
105 |
Q |
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||||||||||||| ||||| |||||||| ||||||||||||||||| |||| ||| |||||| |||||||| ||||||||||||| |
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| T |
44211213 |
ctgtgagaacaccgggcctgaatgcaccgctaacacccttcaaaagcactagtctgtcctctgtaacaccttgctccttcatttcctg |
44211300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 44234205 - 44234284
Alignment:
| Q |
26 |
acaccaggcctaaatgcaccactaacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg |
105 |
Q |
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||||||||||| ||||| |||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||| |
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| T |
44234205 |
acaccaggcctgaatgcgccactaacacccttcaaaagcactaatctgtcctctgtaacaccttgctccttcatttcctg |
44234284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 39338034 - 39337986
Alignment:
| Q |
197 |
ttacctgtggcatgtcaacagaatatataacttggtcaaaggttataga |
245 |
Q |
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|||||||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
39338034 |
ttacctgtggcatgtctacagaatatgtaacttcatcaaaggttataga |
39337986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 39564804 - 39564852
Alignment:
| Q |
197 |
ttacctgtggcatgtcaacagaatatataacttggtcaaaggttataga |
245 |
Q |
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|||||||||||||||| || |||||| |||||| |||||||||||||| |
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| T |
39564804 |
ttacctgtggcatgtctacggaatatgtaacttcatcaaaggttataga |
39564852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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