View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_50 (Length: 255)
Name: NF15659_high_50
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_50 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 24122771 - 24122893
Alignment:
| Q |
133 |
ataaagagctataaatacccatcttgggatcattataaaggcattacataaacaatttctaatattgtactgactacaagtatagttgtggaccgtcaat |
232 |
Q |
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| T |
24122771 |
ataaagagctataaatacccatcttgggatcattataaaggcatcacataaacagtttctaatattgtactcactgcaagtacagttgtggaccgtcaat |
24122870 |
T |
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| Q |
233 |
atattcctaaggacatgcaagcc |
255 |
Q |
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| T |
24122871 |
atattcctaaggacatgcaagcc |
24122893 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 21926629 - 21926753
Alignment:
| Q |
8 |
aggaggagcagagattcctgacatgtacataccgaggaaatagttcctcgaaattacgtctatttaacgagaaacaatggtttctcggaattttttggtc |
107 |
Q |
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||||| |||||||||||||||||||| ||||||||||| |||| |||| |||||| |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
21926629 |
aggagcagcagagattcctgacatgtgtgtaccgaggaaaaagttgctcggaattacctctatttagcgagaaacaatggttcctcggaattttttggtc |
21926728 |
T |
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| Q |
108 |
ggaattgccttcgtttcttgtagtg |
132 |
Q |
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|||||| | ||| |||||||||||| |
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| T |
21926729 |
ggaattactttcatttcttgtagtg |
21926753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 41101016 - 41100896
Alignment:
| Q |
12 |
ggagcagagattcctgacatgtacataccgaggaaatagttcctcgaaattacgtctatttaacgagaaacaatggtttctcggaattttttggtcggaa |
111 |
Q |
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||||||||||||||||||| || |||||||||||||| |||||||| || | | |||| |||||| | | || |||| |||||||||||||||| |
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| T |
41101016 |
ggagcagagattcctgacacgtgcataccgaggaaattgttcctcggaaaatctttattttagtgagaaatcaagtttcctcgaaattttttggtcggaa |
41100917 |
T |
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| Q |
112 |
ttgccttcgtttcttgtagtg |
132 |
Q |
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| T |
41100916 |
ttaccttcatttcttgtagtg |
41100896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 26970746 - 26970867
Alignment:
| Q |
12 |
ggagcagagattcctgacatgtacataccgaggaaatagttcctcgaaattacgtctatttaa-cgagaaacaatggtttctcggaattttttggtcgga |
110 |
Q |
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||||||||||||||||||| || ||||| |||||||| |||||| |||| || | ||||| | | |||||||| | || |||| ||||| ||||||||| |
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| T |
26970746 |
ggagcagagattcctgacacgtgcatac-gaggaaattgttccttgaaaa-acctttattttagcaagaaacaaagtttcctcgaaatttgttggtcgga |
26970843 |
T |
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| Q |
111 |
attgccttcgtttcttgtagtgat |
134 |
Q |
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||| ||||| |||||||||||||| |
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| T |
26970844 |
attaccttcatttcttgtagtgat |
26970867 |
T |
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