View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_54 (Length: 243)
Name: NF15659_high_54
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38711102 - 38711332
Alignment:
| Q |
1 |
cacttggtgaaggagcattccaagtcggtgattgtgttggagcagtcttgctggtagcacttggcgaaggagccttccaagcaggtgattgtgatgggga |
100 |
Q |
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| T |
38711102 |
cacttggtgaaggagcattccaaaccggtgattgtgttggagcagtcttgctggtagcacttggtgaaggagccttccaagcaggtgattgtgatgggga |
38711201 |
T |
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| Q |
101 |
gtgtgttggagcattccaaccgatagcacttggtgaaggagcattccatctagtagcacttggtgtcggagcaatccatgctggagacgttgctggggag |
200 |
Q |
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| T |
38711202 |
gtgtgttggagcattccaaccgatagcacttggtgaaggagcattccatctagtagcacttggtgtcggagcaatccatgctggagacgttgctggggag |
38711301 |
T |
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| Q |
201 |
tgtaccggtgcaacgaaaggtgatgatgatg |
231 |
Q |
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| T |
38711302 |
tgtaccggtgcaacgaaaggtgatgatgatg |
38711332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 38710959 - 38711054
Alignment:
| Q |
53 |
ggtagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
148 |
Q |
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| T |
38710959 |
ggtagcacttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgtcggagtagtccaaccggtagcacttggtgaagaagcactcca |
38711054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 38711028 - 38711123
Alignment:
| Q |
53 |
ggtagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
148 |
Q |
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| T |
38711028 |
ggtagcacttggtgaagaagcactccaagtcggtgattgtgttggggagtgtgcgggagcagtccagccggtagcacttggtgaaggagcattcca |
38711123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38710964 - 38711005
Alignment:
| Q |
1 |
cacttggtgaaggagcattccaagtcggtgattgtgttggag |
42 |
Q |
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| T |
38710964 |
cacttggtgaaggagcatgccaagccggtgattgtgttggag |
38711005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 38710837 - 38710916
Alignment:
| Q |
69 |
ggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
148 |
Q |
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| T |
38710837 |
ggagcattccaagctgatgattgtgctggagaatgtgtaggggcagtccaaccggtagcacttggtgtcggagcattcca |
38710916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 38710890 - 38710981
Alignment:
| Q |
53 |
ggtagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcat |
144 |
Q |
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| T |
38710890 |
ggtagcacttggtgtcggagcattccaacccgatgattttgttggagaatgtgcaggagcagtccaaccggtagcacttggtgaaggagcat |
38710981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38711033 - 38711072
Alignment:
| Q |
1 |
cacttggtgaaggagcattccaagtcggtgattgtgttgg |
40 |
Q |
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| T |
38711033 |
cacttggtgaagaagcactccaagtcggtgattgtgttgg |
38711072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 39705063 - 39704971
Alignment:
| Q |
56 |
agcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcattcca |
148 |
Q |
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| T |
39705063 |
agcacttgacgagggagcattccaagctggcgattgtactggggagtgtgccggagcagtccagacaatagcacttggtgagggagcattcca |
39704971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 39704995 - 39704937
Alignment:
| Q |
55 |
tagcacttggcgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagca |
113 |
Q |
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| T |
39704995 |
tagcacttggtgagggagcattccaagctggtggttgtgttggggagcgtgttggagca |
39704937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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