View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_55 (Length: 243)
Name: NF15659_high_55
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 16824802 - 16825036
Alignment:
| Q |
1 |
ttggaagctggtcagttccatccattagagatgatgcaaaacacttcagaaagcgatgttcctcgaattcgagacgatgagttcgaaagtggcaccaaat |
100 |
Q |
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| T |
16824802 |
ttggaagctggtcagttccatccattagagatgatgcaaaacacttcagaaagcgatgttcctcgaattcgagaagatgaattcgaaagtggcaccaaat |
16824901 |
T |
|
| Q |
101 |
cttgcagtgaaaaccatgaaggtggtgctgcttctggtgaagaacaaggaccacgtcctaaaagaaaacgttaccaccgccacactcagcaccagatcca |
200 |
Q |
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| T |
16824902 |
cttgcagtgaaaaccatgaaggtggtgctgcttctggtgaagaacaaggaccacgtcctaaaagaaaacgttaccaccgccacactcagcaccagatcca |
16825001 |
T |
|
| Q |
201 |
agaaatggaatcgtaagaatactataccctatgct |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
16825002 |
agaaatggaatcgtaagaatactataccctatgct |
16825036 |
T |
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Back To:
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 37305027 - 37304940
Alignment:
| Q |
132 |
ttctggtgaagaacaaggaccacgtcctaaaagaaaacgttaccaccgccacactcagcaccagatccaagaaatggaatcgtaagaa |
219 |
Q |
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|||||||||||| |||| ||| ||| |||| | |||||||| ||||| || || ||||| |||||||||||||||||| |||||||| |
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| T |
37305027 |
ttctggtgaagatcaagaacctcgtgctaagaagaaacgttatcaccgtcatacacagcatcagatccaagaaatggaagcgtaagaa |
37304940 |
T |
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