View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_58 (Length: 238)
Name: NF15659_high_58
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38711124 - 38710893
Alignment:
| Q |
1 |
ttggaatgctcctgcaccaagtgctaccggctggactgctcccgcaca------------atcaccgacttggagtgcttcttcaccaagtgccaccggt |
88 |
Q |
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| T |
38711124 |
ttggaatgctccttcaccaagtgctaccggctggactgctcccgcacactccccaacacaatcaccgacttggagtgcttcttcaccaagtgctaccggt |
38711025 |
T |
|
| Q |
89 |
tggactactccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacacaat |
188 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38711024 |
tggactactccgacacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacaaaat |
38710925 |
T |
|
| Q |
189 |
catcggcttggaatgctccgacaccaagtgct |
220 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
38710924 |
catcgggttggaatgctccgacaccaagtgct |
38710893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38711181 - 38710962
Alignment:
| Q |
1 |
ttggaatgctcctgcaccaagtgctaccggctggactgctcccgcacaatcaccgacttggagtgcttcttcaccaagtgccaccggttggactactccg |
100 |
Q |
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| T |
38711181 |
ttggaaggctccttcaccaagtgctaccagcaagactgctccaacacaatcaccggtttggaatgctccttcaccaagtgctaccggctggactgctccc |
38711082 |
T |
|
| Q |
101 |
gcacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacacaatcatcggcttgga |
200 |
Q |
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| T |
38711081 |
gcacactccccaacacaatcaccgacttggagtgcttcttcaccaagtgctaccggttggactactccgacacactctccaacacaatcaccggcttggc |
38710982 |
T |
|
| Q |
201 |
atgctccgacaccaagtgct |
220 |
Q |
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| T |
38710981 |
atgctccttcaccaagtgct |
38710962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 38710999 - 38710827
Alignment:
| Q |
45 |
cacaatcaccgacttggagtgcttcttcaccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcacc |
144 |
Q |
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||||||||||| ||||| |||| ||||||||||||| |||||||||||| |||| ||||| ||||||||| ||||| ||| |||| ||||||| |||| |
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| T |
38710999 |
cacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacaaaatcatcgggttggaatgctccgacacc |
38710900 |
T |
|
| Q |
145 |
aagtgctaccggttggactgctcctgcacattctccaacacaatcatcggcttggaatgctccgacaccaagt |
217 |
Q |
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| T |
38710899 |
aagtgctaccggttggactgcccctacacattctccagcacaatcatcagcttggaatgctccgacaccaagt |
38710827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 38711249 - 38711154
Alignment:
| Q |
59 |
tggagtgcttcttcaccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctacc |
154 |
Q |
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| T |
38711249 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaagtgctacc |
38711154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 38711245 - 38711157
Alignment:
| Q |
132 |
atgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacacaatcatcggcttggaatgctccgacaccaagtgct |
220 |
Q |
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| T |
38711245 |
atgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaagtgct |
38711157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 39704953 - 39705050
Alignment:
| Q |
110 |
ccaacacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacacaatcatcggcttggaatgctcc |
207 |
Q |
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||||||||| |||| |||||| ||||||| ||||||||||||| | ||||||||||| ||||| || ||| |||||| | |||||||||||||| |
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| T |
39704953 |
ccaacacaaccaccagcttggaatgctccctcaccaagtgctattgtctggactgctccggcacactccccagtacaatcgccagcttggaatgctcc |
39705050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 39704825 - 39704878
Alignment:
| Q |
96 |
ctccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtg |
149 |
Q |
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| T |
39704825 |
ctccggcacgctccccaacacaaccaccggcttggaatgctccctcatcaagtg |
39704878 |
T |
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