View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_high_63 (Length: 236)

Name: NF15659_high_63
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_high_63
NF15659_high_63
[»] chr1 (2 HSPs)
chr1 (89-236)||(36011321-36011466)
chr1 (16-66)||(36011469-36011519)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 36011466 - 36011321
Alignment:
Q  89 atttcttcaagtgatgaagataatcaatatgaaactaaaaatttgatgacatacatatatacataataatattcctaataatacccgaatacaactcata 188  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  36011466 atttcttcaagtgatggagataattaataggaaactaaaaatttgatgacatacatata--cataataatattcctaataatacccgagtacaactcata 36011369  T
Q  189 tgataaaaagttatagaaatatcttacatgcggaagatgatttcaaac 236  Q
    ||||||||| |||||||| |||||||||| | |||||||| |||||||    
T  36011368 tgataaaaaattatagaagtatcttacatccagaagatgagttcaaac 36011321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 36011519 - 36011469
Alignment:
Q  16 tattaaacatcgaagaacattcaagaactaactcctccttccactacaaca 66  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  36011519 tattaaacaacgaagaacattcaagaactaactcctcctcccactacaaca 36011469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University