View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_71 (Length: 222)
Name: NF15659_high_71
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 9166637 - 9166840
Alignment:
| Q |
1 |
ataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggta |
100 |
Q |
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| T |
9166637 |
ataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactacttctttcccttcataagcaggta |
9166736 |
T |
|
| Q |
101 |
atatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatgta |
200 |
Q |
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| T |
9166737 |
atatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagaaccaaggcctgttcttgtacttctcctatgta |
9166836 |
T |
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| Q |
201 |
atgc |
204 |
Q |
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|||| |
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| T |
9166837 |
atgc |
9166840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 9155235 - 9155420
Alignment:
| Q |
19 |
tccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtga |
118 |
Q |
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||||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
9155235 |
tccactaacacaatccttaacaagcataccaggaaccagcaggaatggcaacaaactccttcttttccttcattagcaggtaatacgtagctgattgtga |
9155334 |
T |
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| Q |
119 |
accttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatgtaatgc |
204 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9155335 |
accttcaagatgaccctgaaactgggactgacctgtttcatcctccaagagccaaggcctgttcttgtacttctcctatgcaatgc |
9155420 |
T |
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