View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15659_low_10 (Length: 541)
Name: NF15659_low_10
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 28666997 - 28666619
Alignment:
| Q |
1 |
gttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggagagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28666997 |
gttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggagagac |
28666898 |
T |
|
| Q |
101 |
acttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgagtcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28666897 |
acttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgagtcaga |
28666798 |
T |
|
| Q |
201 |
gaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgtttatctgaaactct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28666797 |
gaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgtttatctgaaactct |
28666698 |
T |
|
| Q |
301 |
cagattatatccttctgttcctgttgatcacaaagaggtaatttttcagtttttgtcacatcattcctttttcattcta |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28666697 |
cagattatatccttctgttcctgttgatcacaaggaggtaatttttcagtttttgtcacatcattcctttttcattcta |
28666619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 438 - 527
Target Start/End: Complemental strand, 28666589 - 28666500
Alignment:
| Q |
438 |
attgtggatttttaagaaaaatattgtttctatttacctatcatattcaaatttgaaagttacaaccactattttttatcagttacatgt |
527 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28666589 |
attgtagatttttaagaaaaatattgtttctatttacctatcatattcaaatttgaaagttacaaccactattttttatcagttacatgt |
28666500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 13887550 - 13887897
Alignment:
| Q |
1 |
gttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggagagac |
100 |
Q |
| |
|
||||||||| ||||||||| | || ||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
13887550 |
gttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagggatatatgtgtaagttttatattagctgggagagac |
13887649 |
T |
|
| Q |
101 |
acttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgagtcaga |
200 |
Q |
| |
|
|||||||| || ||||| || ||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||| | |
|
|
| T |
13887650 |
acttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggagaaaatattagaagagatttgcagggttgtgagtcaaa |
13887749 |
T |
|
| Q |
201 |
g------aaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgtttatctga |
294 |
Q |
| |
|
| | | |||| || ||||||| ||| | ||||||| | ||| | ||||| ||||| || ||||||| |||||||||||| | | || || |
|
|
| T |
13887750 |
gggaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatgggttatttgcatgctgctctttcaga |
13887849 |
T |
|
| Q |
295 |
aactctcagattatatccttctgttcctgttgatcacaaagaggtaat |
342 |
Q |
| |
|
|||||| ||||| ||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
13887850 |
aactcttagattgtatccttctgttcctatggatcataaagaggtaat |
13887897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 13897660 - 13897337
Alignment:
| Q |
1 |
gttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggagagac |
100 |
Q |
| |
|
||||||||| || |||| | | |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||| ||| |||||||||||||| |
|
|
| T |
13897660 |
gttaactgtgttcatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaatttcatattagctgggagagac |
13897561 |
T |
|
| Q |
101 |
acttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgagtcaga |
200 |
Q |
| |
|
|||||||| || ||||| || ||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||| ||| ||| |||| | |
|
|
| T |
13897560 |
acttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgtgtcaaa |
13897461 |
T |
|
| Q |
201 |
gaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgtttatctgaaactct |
300 |
Q |
| |
|
| | ||||| || ||||||| ||| | ||||||||| ||| | |||||| ||||| || |||||||| ||||||||||| | | || ||| |||| |
|
|
| T |
13897460 |
gggaggatattaataaggaagtgtttaatgattctttgagattcaagcctgaggagattaagaagatggattatttgcatgcagctctttcagaagctct |
13897361 |
T |
|
| Q |
301 |
cagattatatccttctgttcctgt |
324 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13897360 |
tagattatatccttctgttcctgt |
13897337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 7295668 - 7295586
Alignment:
| Q |
25 |
ggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggagagacacttcttct |
109 |
Q |
| |
|
|||||||||||||| | | || |||||||||| | ||||||||||||| ||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
7295668 |
ggatgagaatggaatttcatactcagataagtgt--gagggatatatgtttgaatttcatattagccgggagagacacttcttct |
7295586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 1034717 - 1034525
Alignment:
| Q |
1 |
gttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggagagac |
100 |
Q |
| |
|
||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
1034717 |
gttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaattttatattagctgggagagac |
1034618 |
T |
|
| Q |
101 |
acttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtg |
193 |
Q |
| |
|
|||||||| || |||||||| ||| |||| ||||||||||||||||||| |||||||| ||||||||||| || |||| ||||||| |
|
|
| T |
1034617 |
acttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagaaatttgcagggtggtg |
1034525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University