View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_12 (Length: 533)
Name: NF15659_low_12
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 6232444 - 6232964
Alignment:
| Q |
1 |
aatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaac |
100 |
Q |
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| T |
6232444 |
aatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaac |
6232543 |
T |
|
| Q |
101 |
ggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
6232544 |
ggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctaaaaaatcttttccttcttgtgataattcctctggaa |
6232643 |
T |
|
| Q |
201 |
tctttggcaattcttctccaaccccaattcgaatcgtcaacattaacatatctgactcattccat---gcgggttctccggtaatcatctccacgacggc |
297 |
Q |
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| T |
6232644 |
tttttggcaattcttctccaacaccaattcgaatcgtcaacatcaacatatctgattcattccatgcggcgggttctccggtaatcatctccacgacggc |
6232743 |
T |
|
| Q |
298 |
gcaaccaagagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttca |
397 |
Q |
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| T |
6232744 |
gcaaccaagagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttca |
6232843 |
T |
|
| Q |
398 |
ccttgttctacacctatctctttcgcaaggccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcacaatgaa |
497 |
Q |
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| T |
6232844 |
ccttgttctacacctgtctctttcgcaagcccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcacaatgaa |
6232943 |
T |
|
| Q |
498 |
caaacccttttttgtgaatat |
518 |
Q |
| |
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||||||||||||||||||||| |
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| T |
6232944 |
caaacccttttttgtgaatat |
6232964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 38 - 446
Target Start/End: Original strand, 6221699 - 6222116
Alignment:
| Q |
38 |
gacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctca |
137 |
Q |
| |
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|||||||||||||||| | ||||| || || | ||||||||||||| || | ||||||||| |||||| || ||||| ||||| ||||||||| | |
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| T |
6221699 |
gacaatggcaactcattgatcaactctttcaccaatgaaacagtttcatcacctgagataaactcatgtttcaaaagcatctctgccgtccatctttttg |
6221798 |
T |
|
| Q |
138 |
aaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatctttggcaattcttctccaaccccaattcgaatcgt |
237 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |||| ||| | ||||||||||||| |
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| T |
6221799 |
aaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatcaacggtgattcgtcttctgccccaattcgaattaa |
6221898 |
T |
|
| Q |
238 |
caacattaacatatctga----ct-----cattccatgcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctggcgat |
328 |
Q |
| |
|
|||| |||||| ||| || |||||||||| ||| || ||| ||||||||| | ||||||||||||||||||||||| || || ||| |
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| T |
6221899 |
caacgaccacatatttgaaccgctgcttacattccatgcatgtttacccgtagccatctccacaatagcgcaaccaagagcccatatatctgccggtgat |
6221998 |
T |
|
| Q |
329 |
tcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttcaccttgttctacacctatctctttcgcaaggc |
428 |
Q |
| |
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||||||||||| || ||||| ||||||||||||||| || |||||||| || || | | ||| |||| |||| || |||| |||| || ||||||| |
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| T |
6221999 |
tcataaacactctcgttcaccgcttctggtgacatatacaatggagttcccctacattccaattttccaccatgttttagacctttctccttagcaaggc |
6222098 |
T |
|
| Q |
429 |
cgaaatctgaaatcttaa |
446 |
Q |
| |
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| ||||| |||||||||| |
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|
| T |
6222099 |
caaaatccgaaatcttaa |
6222116 |
T |
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