View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_low_14 (Length: 459)

Name: NF15659_low_14
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_low_14
NF15659_low_14
[»] chr5 (45 HSPs)
chr5 (1-440)||(40611326-40611760)
chr5 (1-378)||(544775-545147)
chr5 (1-376)||(28590736-28591107)
chr5 (13-418)||(32640376-32640776)
chr5 (1-376)||(25590559-25590930)
chr5 (1-376)||(8075458-8075827)
chr5 (1-416)||(14890785-14891180)
chr5 (46-416)||(2466441-2466807)
chr5 (1-376)||(4593729-4594095)
chr5 (127-416)||(2464759-2465044)
chr5 (127-376)||(40612407-40612653)
chr5 (127-375)||(8074580-8074825)
chr5 (127-416)||(4592951-4593229)
chr5 (127-376)||(14889898-14890144)
chr5 (127-376)||(28589828-28590077)
chr5 (129-416)||(545794-546069)
chr5 (189-350)||(18004813-18004970)
chr5 (127-416)||(32641491-32641759)
chr5 (127-348)||(9537199-9537410)
chr5 (184-350)||(32555323-32555494)
chr5 (135-250)||(27720714-27720827)
chr5 (247-351)||(34173434-34173538)
chr5 (178-275)||(9537850-9537948)
chr5 (186-250)||(21069540-21069604)
chr5 (284-347)||(13651043-13651106)
chr5 (283-350)||(37072733-37072800)
chr5 (255-317)||(2314387-2314449)
chr5 (256-334)||(21069480-21069557)
chr5 (133-174)||(13650990-13651031)
chr5 (188-252)||(30970296-30970361)
chr5 (265-341)||(16979176-16979252)
chr5 (255-350)||(578625-578720)
chr5 (284-339)||(31946935-31946990)
chr5 (129-174)||(19186055-19186100)
chr5 (284-348)||(12445299-12445363)
chr5 (264-339)||(19271528-19271604)
chr5 (134-174)||(23773186-23773226)
chr5 (247-294)||(578051-578098)
chr5 (298-345)||(9537945-9537992)
chr5 (127-174)||(19185981-19186028)
chr5 (127-174)||(28865010-28865057)
chr5 (284-334)||(16611879-16611929)
chr5 (286-348)||(19186114-19186175)
chr5 (387-416)||(16611818-16611847)
chr5 (137-174)||(23773301-23773338)
[»] chr7 (62 HSPs)
chr7 (1-378)||(42477507-42477880)
chr7 (1-416)||(48788299-48788705)
chr7 (1-376)||(7258404-7258774)
chr7 (1-376)||(35727827-35728198)
chr7 (1-376)||(44333266-44333637)
chr7 (1-416)||(48646139-48646549)
chr7 (134-416)||(10898829-10899106)
chr7 (5-307)||(45583792-45584083)
chr7 (132-416)||(45584250-45584529)
chr7 (125-416)||(30924763-30925041)
chr7 (127-376)||(48647191-48647437)
chr7 (127-374)||(10894474-10894718)
chr7 (127-416)||(7259441-7259717)
chr7 (127-376)||(35728843-35729080)
chr7 (133-378)||(44334213-44334446)
chr7 (1-130)||(10895283-10895412)
chr7 (128-332)||(39708302-39708495)
chr7 (196-320)||(12221486-12221610)
chr7 (228-416)||(48777346-48777534)
chr7 (189-348)||(7509259-7509419)
chr7 (223-374)||(42478111-42478261)
chr7 (127-347)||(12223436-12223644)
chr7 (186-350)||(43457623-43457788)
chr7 (144-348)||(34710156-34710349)
chr7 (213-351)||(46287219-46287353)
chr7 (197-348)||(6680336-6680479)
chr7 (133-250)||(33607271-33607385)
chr7 (186-350)||(43461526-43461685)
chr7 (127-341)||(19433666-19433873)
chr7 (185-350)||(5929920-5930077)
chr7 (127-244)||(32794543-32794657)
chr7 (186-348)||(39824306-39824471)
chr7 (271-348)||(8048653-8048730)
chr7 (138-348)||(34707777-34707977)
chr7 (257-348)||(24934954-24935045)
chr7 (284-350)||(24287655-24287721)
chr7 (204-347)||(24935511-24935657)
chr7 (256-338)||(46286690-46286772)
chr7 (127-252)||(44529541-44529663)
chr7 (204-347)||(2677094-2677241)
chr7 (284-348)||(8375505-8375569)
chr7 (187-330)||(8047010-8047145)
chr7 (256-350)||(33607368-33607462)
chr7 (127-174)||(24287795-24287842)
chr7 (127-250)||(32793423-32793543)
chr7 (264-350)||(44529181-44529270)
chr7 (209-269)||(48249823-48249883)
chr7 (204-347)||(385448-385594)
chr7 (186-252)||(33061081-33061148)
chr7 (286-348)||(22621304-22621366)
chr7 (284-350)||(32793346-32793412)
chr7 (129-169)||(39708486-39708526)
chr7 (127-174)||(48787611-48787658)
chr7 (284-350)||(8870154-8870220)
chr7 (284-330)||(8870909-8870955)
chr7 (133-170)||(330077-330114)
chr7 (311-348)||(27067959-27067996)
chr7 (311-348)||(27210317-27210354)
chr7 (387-416)||(33060900-33060929)
chr7 (387-416)||(43461732-43461761)
chr7 (284-333)||(44530519-44530568)
chr7 (254-334)||(385010-385089)
[»] chr3 (39 HSPs)
chr3 (1-416)||(17700608-17701019)
chr3 (5-416)||(36279944-36280350)
chr3 (1-378)||(55389093-55389465)
chr3 (1-416)||(53958725-53959133)
chr3 (1-376)||(48573114-48573488)
chr3 (1-376)||(48809280-48809649)
chr3 (1-273)||(52317146-52317413)
chr3 (127-374)||(48574207-48574451)
chr3 (129-374)||(36279083-36279317)
chr3 (127-348)||(55388216-55388436)
chr3 (127-416)||(17701676-17701952)
chr3 (127-376)||(52318073-52318311)
chr3 (255-369)||(48808508-48808622)
chr3 (190-376)||(2591756-2591941)
chr3 (248-376)||(53957802-53957930)
chr3 (187-345)||(36827267-36827418)
chr3 (235-348)||(19115020-19115133)
chr3 (256-348)||(47428457-47428549)
chr3 (264-330)||(33837338-33837404)
chr3 (255-356)||(20464238-20464339)
chr3 (257-348)||(19114670-19114760)
chr3 (256-339)||(45599050-45599133)
chr3 (255-348)||(47117945-47118037)
chr3 (256-348)||(45600833-45600925)
chr3 (256-348)||(47075245-47075337)
chr3 (271-348)||(33427888-33427965)
chr3 (309-378)||(34263932-34264001)
chr3 (264-329)||(40317946-40318011)
chr3 (258-334)||(3693996-3694072)
chr3 (186-259)||(40206163-40206237)
chr3 (128-174)||(48808690-48808736)
chr3 (281-330)||(29188270-29188319)
chr3 (256-350)||(612389-612484)
chr3 (289-347)||(40206060-40206118)
chr3 (256-348)||(33428329-33428421)
chr3 (204-253)||(33837485-33837534)
chr3 (387-416)||(47075355-47075384)
chr3 (259-332)||(47428008-47428081)
chr3 (284-348)||(49261459-49261523)
[»] chr8 (45 HSPs)
chr8 (1-416)||(35178428-35178837)
chr8 (1-376)||(10406335-10406691)
chr8 (127-416)||(32898193-32898478)
chr8 (131-416)||(35177485-35177764)
chr8 (187-416)||(1952783-1953003)
chr8 (127-376)||(10407332-10407578)
chr8 (125-348)||(28619279-28619498)
chr8 (129-334)||(5965172-5965374)
chr8 (127-350)||(5737017-5737236)
chr8 (248-348)||(30134743-30134843)
chr8 (282-350)||(45476337-45476405)
chr8 (187-350)||(5737818-5737971)
chr8 (254-348)||(45476415-45476509)
chr8 (189-348)||(32564288-32564455)
chr8 (186-250)||(32563828-32563892)
chr8 (256-348)||(41122616-41122708)
chr8 (264-334)||(41121296-41121366)
chr8 (127-175)||(28526295-28526343)
chr8 (255-350)||(39138517-39138612)
chr8 (184-246)||(41121361-41121423)
chr8 (126-250)||(41122512-41122633)
chr8 (266-350)||(2552189-2552272)
chr8 (127-175)||(31074362-31074410)
chr8 (127-174)||(28006324-28006371)
chr8 (127-174)||(28063627-28063674)
chr8 (278-348)||(41754145-41754215)
chr8 (298-350)||(33315033-33315085)
chr8 (298-350)||(36032881-36032933)
chr8 (284-348)||(41754688-41754752)
chr8 (127-174)||(30134863-30134910)
chr8 (284-350)||(31075173-31075238)
chr8 (256-334)||(32563767-32563845)
chr8 (284-345)||(28006478-28006539)
chr8 (284-345)||(28063781-28063842)
chr8 (288-348)||(12637647-12637707)
chr8 (271-334)||(13144531-13144594)
chr8 (129-164)||(31075037-31075072)
chr8 (1-43)||(1952051-1952093)
chr8 (264-350)||(8569563-8569649)
chr8 (127-169)||(12637484-12637526)
chr8 (127-164)||(1952733-1952770)
chr8 (387-416)||(5965446-5965475)
chr8 (277-334)||(9625381-9625438)
chr8 (131-172)||(41754561-41754602)
chr8 (284-348)||(28524935-28524999)
[»] chr2 (59 HSPs)
chr2 (1-416)||(31091150-31091560)
chr2 (1-376)||(39015134-39015505)
chr2 (1-376)||(2911111-2911481)
chr2 (1-350)||(24459077-24459422)
chr2 (1-376)||(39999957-40000328)
chr2 (1-266)||(32765904-32766164)
chr2 (127-416)||(32765028-32765312)
chr2 (131-374)||(24458191-24458431)
chr2 (127-376)||(2910229-2910475)
chr2 (135-416)||(14704096-14704363)
chr2 (127-345)||(31090317-31090532)
chr2 (127-416)||(39016142-39016416)
chr2 (205-350)||(17330042-17330187)
chr2 (187-350)||(7073805-7073969)
chr2 (256-350)||(43380742-43380836)
chr2 (24-100)||(14705021-14705097)
chr2 (258-346)||(21732274-21732362)
chr2 (312-416)||(32766168-32766272)
chr2 (228-348)||(5914858-5914978)
chr2 (241-350)||(31443084-31443193)
chr2 (258-334)||(21733627-21733703)
chr2 (254-348)||(7412269-7412363)
chr2 (255-378)||(39999079-39999197)
chr2 (277-350)||(14887373-14887446)
chr2 (264-357)||(33163320-33163413)
chr2 (264-340)||(12010224-12010300)
chr2 (129-246)||(38984742-38984857)
chr2 (127-331)||(39256762-39256950)
chr2 (125-175)||(18675451-18675501)
chr2 (273-350)||(34037544-34037621)
chr2 (284-347)||(18676705-18676768)
chr2 (284-347)||(37607280-37607343)
chr2 (204-294)||(8420747-8420842)
chr2 (284-350)||(26585251-26585316)
chr2 (241-339)||(33439407-33439504)
chr2 (129-171)||(34582379-34582421)
chr2 (256-350)||(43381045-43381139)
chr2 (197-250)||(33162020-33162073)
chr2 (247-347)||(12003745-12003845)
chr2 (187-239)||(33163258-33163310)
chr2 (127-174)||(38855949-38855996)
chr2 (264-350)||(33161943-33162029)
chr2 (204-253)||(7412568-7412617)
chr2 (265-334)||(11985861-11985930)
chr2 (125-174)||(38854249-38854298)
chr2 (284-348)||(12396162-12396226)
chr2 (254-350)||(31442506-31442602)
chr2 (186-246)||(43380823-43380883)
chr2 (187-266)||(12004762-12004841)
chr2 (284-350)||(12746082-12746149)
chr2 (186-349)||(12011277-12011438)
chr2 (256-350)||(17466683-17466776)
chr2 (204-262)||(31442614-31442672)
chr2 (127-163)||(15440864-15440900)
chr2 (254-350)||(28864663-28864759)
chr2 (304-348)||(36012725-36012769)
chr2 (286-350)||(38853930-38853994)
chr2 (131-175)||(38854122-38854166)
chr2 (286-350)||(38854964-38855028)
[»] chr1 (38 HSPs)
chr1 (3-376)||(52440185-52440554)
chr1 (1-416)||(9340663-9341058)
chr1 (62-376)||(32664632-32664941)
chr1 (1-416)||(7945197-7945587)
chr1 (128-348)||(52439618-52439835)
chr1 (127-376)||(32665525-32665764)
chr1 (129-350)||(6612585-6612803)
chr1 (255-416)||(9339736-9339896)
chr1 (127-378)||(7944282-7944534)
chr1 (131-350)||(51450175-51450391)
chr1 (133-348)||(34088213-34088415)
chr1 (197-350)||(22857373-22857527)
chr1 (133-345)||(6613736-6613930)
chr1 (204-334)||(26518280-26518407)
chr1 (215-315)||(51453552-51453652)
chr1 (204-350)||(11830064-11830214)
chr1 (257-350)||(25038056-25038149)
chr1 (257-350)||(25043268-25043361)
chr1 (284-347)||(8975337-8975400)
chr1 (256-350)||(3117824-3117918)
chr1 (234-348)||(5782551-5782665)
chr1 (139-250)||(25038133-25038240)
chr1 (139-250)||(25043345-25043452)
chr1 (187-350)||(22856855-22857001)
chr1 (257-341)||(34085706-34085790)
chr1 (255-347)||(16249821-16249913)
chr1 (271-350)||(39977507-39977586)
chr1 (186-244)||(23703948-23704006)
chr1 (284-353)||(1001323-1001392)
chr1 (284-350)||(1407803-1407869)
chr1 (284-334)||(29766114-29766164)
chr1 (136-238)||(34085794-34085893)
chr1 (284-350)||(44720729-44720795)
chr1 (254-334)||(39726539-39726618)
chr1 (284-334)||(11060667-11060717)
chr1 (284-354)||(44719521-44719591)
chr1 (204-244)||(17588802-17588842)
chr1 (291-351)||(39725513-39725573)
[»] chr4 (34 HSPs)
chr4 (1-376)||(47878125-47878478)
chr4 (120-376)||(54574554-54574806)
chr4 (102-291)||(42278727-42278912)
chr4 (129-376)||(42278178-42278413)
chr4 (127-378)||(47874690-47874930)
chr4 (134-350)||(20599647-20599854)
chr4 (185-348)||(4701940-4702103)
chr4 (187-339)||(4703004-4703154)
chr4 (127-259)||(19051106-19051232)
chr4 (187-249)||(6039377-6039439)
chr4 (253-350)||(42391757-42391854)
chr4 (256-350)||(19050411-19050505)
chr4 (290-376)||(50694878-50694964)
chr4 (259-348)||(26685321-26685410)
chr4 (284-350)||(6039296-6039362)
chr4 (256-333)||(53770944-53771021)
chr4 (186-250)||(19050488-19050552)
chr4 (256-348)||(53770470-53770562)
chr4 (127-174)||(24745782-24745829)
chr4 (127-170)||(24753282-24753325)
chr4 (284-334)||(2786414-2786464)
chr4 (125-175)||(21622191-21622241)
chr4 (286-348)||(48739944-48740006)
chr4 (284-349)||(32244450-32244515)
chr4 (254-350)||(38216621-38216715)
chr4 (284-348)||(21622000-21622064)
chr4 (286-350)||(21623001-21623065)
chr4 (204-252)||(42391688-42391736)
chr4 (127-174)||(21622849-21622896)
chr4 (271-350)||(26172809-26172888)
chr4 (255-305)||(26170863-26170913)
chr4 (264-350)||(39870536-39870622)
chr4 (387-416)||(39869010-39869039)
chr4 (304-348)||(31844866-31844910)
[»] scaffold0767 (2 HSPs)
scaffold0767 (127-334)||(5985-6185)
scaffold0767 (186-350)||(5772-5921)
[»] chr6 (9 HSPs)
chr6 (128-356)||(31239716-31239941)
chr6 (278-348)||(30748167-30748237)
chr6 (253-347)||(19600096-19600189)
chr6 (204-259)||(29845764-29845819)
chr6 (204-259)||(29857029-29857084)
chr6 (127-174)||(30748315-30748362)
chr6 (284-334)||(6468733-6468783)
chr6 (284-350)||(29856920-29856986)
chr6 (387-416)||(31219164-31219193)
[»] scaffold0039 (1 HSPs)
scaffold0039 (230-350)||(79248-79368)
[»] scaffold0016 (2 HSPs)
scaffold0016 (257-330)||(36400-36473)
scaffold0016 (224-268)||(36339-36383)
[»] scaffold0237 (3 HSPs)
scaffold0237 (204-259)||(1969-2024)
scaffold0237 (204-259)||(3231-3286)
scaffold0237 (284-350)||(3122-3188)
[»] scaffold0009 (1 HSPs)
scaffold0009 (134-175)||(142587-142628)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 40611760 - 40611326
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40611760 tatcatttgaatatatatcgagctcttgattaccgtatactcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 40611661  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |||    ||||||||||||||||||    
T  40611660 agatgttaatggatttgccaattcattgtctgggacctaactgatagtaagtatgtacagtcagggacctaacactaa----gttgtgtttaatgaaaga 40611565  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40611564 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttc 40611465  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||        ||||||||||||||    
T  40611464 agggacccaagtgaccattttctactttcactttggtccctgtgacacctcatatgcgccacatcatcacctaacata-tttttttaacgtcagagacta 40611366  T
Q  401 aagtgataacggaagtttgtatttaatcctgagtcaggga 440  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  40611365 aagtgataagggaagtttgtatttaatcctgagtcaggga 40611326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 545147 - 544775
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  545147 tatcatttgaatatatcttgagctcttgattaccgtatactcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 545048  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||    | |||||||||||||||||||||    
T  545047 agatgttaatagatttgttaattcattgttagggacctaactgatagtaagtatgcacagtcagggacctaac----aataagttgtgtttaatgaaaga 544952  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||| ||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  544951 ttaattttgaacaaaagagataattatatgattttta-ggatttgagatttagggatttaggaatttgatattcaatttgggaatattgatttttggttc 544853  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacata 378  Q
    ||| |||||| |||| ||||||||||||||||||| ||||||||||||||  |||||||||||| |||||||||||||    
T  544852 aggaacccaaatgactattttctactttcactttgatccctgtgacacctcatatgcgccacataatcacttaacata 544775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 28590736 - 28591107
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28590736 tatcatttgaatatatcttgagctcttgattattgtatgctcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 28590835  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  ||||||||||||| || ||||||||||||||||||||| ||||||||| |||||    | |||||||||||||||| ||||    
T  28590836 agatgctaatggatttgctaattcattgtcagtgagctaactgatagtaagtatgcacagtcaggga-ctaac----agtaagttgtgtttaatggaaga 28590930  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattga-tttttggtt 299  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  28590931 ttaattttgaacaaaaaagagaattatatgacatttagggatttgagatttaaggatttaagaatttgatattcaatttgggaatattgattttttggtt 28591030  T
Q  300 cagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28591031 cagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgcgccacatcatcacttaaca 28591107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 32640776 - 32640376
Alignment:
Q  13 atatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaatagatgttaatgg 112  Q
    ||||||||||||||||||||  |||| ||||  ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  32640776 atatcttgagctcttgattattgtatgctcagacctacagggtagagatatgaattattatgtgaatataacaataatcaagagtaatagatgctaatgg 32640677  T
Q  113 atttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaac 212  Q
    |||||  ||||||||||||||||| |||||||||||||||||||| | ||| |||||||||| |||    ||||||||||||| |||||||||||||||     
T  32640676 atttgctaattcattgtcagggacataactgatagtaagtatgcacaatcaaggacctaacagtaa----gttgtgtttaatggaagattaattttgaat 32640581  T
Q  213 aaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagt 312  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| ||||    
T  32640580 aaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaattttggaatattgatttttggttcaaggaccaaagt 32640481  T
Q  313 gaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacgg 412  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |        |||||||||||||||||||||||| |    
T  32640480 gaccattttctactttcactttggtccctgtgacaccttatatgtgtcacatcatcacttaaca-aatttttttaacgtcagagactaaagtgataacag 32640382  T
Q  413 aagttt 418  Q
    ||||||    
T  32640381 aagttt 32640376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 25590930 - 25590559
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||| ||||||||||||||||||||  |||| ||||  |||| | ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  25590930 tatcatttgaacatatcttgagctcttgattattgtatgctcagacctatgcggtaatgatatgaattatcatgtgaatataacaataatcaagagtaat 25590831  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |||    | | ||||||||| ||||    
T  25590830 agatgctaatggatttgctaattcattgtcagggatctaactgatagtaagtatgcacagttagggacctaacaataa----gatttgtttaatggaaga 25590735  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25590734 ttaattttgaacaaaagagagaattagatgacatttatggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttc 25590635  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25590634 agagaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgcgccacatcatcacttaaca 25590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 8075458 - 8075827
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||| ||||||| |||||||| |||| ||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8075458 tatcatttgaatatatgttgagctattgattacggtatgctcagacatacggggtagagatatgaattattatgtgaatataacaataatcaagagtaat 8075557  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  ||||||||||||| ||| |||||||| || |||||||| ||||| |||||||||    | |||||||||||||||| ||||    
T  8075558 agatgctaatggatttgctaattcattgtcagtgacttaactgatggttagtatgcacagtca-ggacctaac----agtaagttgtgtttaatggaaga 8075652  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  8075653 ttaattttgaacaaaagagagaattagatgacattta-ggatttgagatttagggatataggaatttgatattcaatttgggaatattgatttttggttc 8075751  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||| |||||| ||||||| |||||||||||||||| ||||||||||  |||||| |||||||||||||||||    
T  8075752 agggaccaaagtgatcattttcgactttcactttggtccttgtgacacctcatatgcgtcacatcatcacttaaca 8075827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 14890785 - 14891180
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||||||||| |||||||||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14890785 tatcatttgaatatatcttgagatcttgattaatgtatgctcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 14890884  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||||||||||||    | |||||||||||||||| ||||    
T  14890885 agatgctaatggatttgctaattcattgtcagggacctaactgatagtaaatatgcacagtcagggacctaac----aataagttgtgtttaatggaaga 14890980  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    ||||||||||||||||||||| |||| |||||||||||               |||||||||||||||| |||||||||| ||||||||||||||| |||    
T  14890981 ttaattttgaacaaaagagaggattagatgacatttag---------------ggatttaggaatttgaaattcaatttgggaatattgatttttgattc 14891065  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    ||||||  |||||||||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||||        ||||||||||||||    
T  14891066 agggactaaagtgaccattttctactatcactttggtccttgtgacacctcatatgcgccacatcatcacttaacata-tttttttaacgtcagagacta 14891164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 46 - 416
Target Start/End: Original strand, 2466441 - 2466807
Alignment:
Q  46 cctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaatagatgttaatggatttgtcaattcattgtcagggacctaactgat 145  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||   |||||||||||| |||| ||||||||    
T  2466441 cctacggggtagagatatgaattatcatatgaatataacaataatcaacagtaatagatgctaatggattttctaattcattgtcaaggacataactgat 2466540  T
Q  146 agtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttg 245  Q
    |||||||||||| |||||| ||||||||| |||    ||||||||||||| |   |||||||||||||||| ||||||||| ||||||||||||||||||    
T  2466541 agtaagtatgcacagtcagagacctaacaataa----gttgtgtttaatggagatttaattttgaacaaaaaagagaattagatgacatttagggatttg 2466636  T
Q  246 agatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtga 345  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||| || ||    
T  2466637 agatttaaggatttaagaatttgatattcaatttgggaatattgaattttggttcagggaccaaaatgactattttctactttcactttggtccatggga 2466736  T
Q  346 caccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    |||||  ||||| || ||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  2466737 cacctcatatgcaccgcatcatcacttaacagattttttttaacgtcagggactaaagtgataacggaagt 2466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 4593729 - 4594095
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtata--ctcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagta 98  Q
    ||||||||||||||||||||||||||||||||| || ||  || |   ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  4593729 tatcatttgaatatatcttgagctcttgattactgtgtatgctgagatctacgaggtagagatatgaattatcacgtgaatataacaataatcaagagta 4593828  T
Q  99 atagatgttaatggatttgtcaattcatt-gtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaa 197  Q
     |||||| || ||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||    ||| ||||||||| |    
T  4593829 gtagatgctattggatttgttaattcatttgtcagggatctaactgatagtaagtatgcacagtcagggacctaacattaa----gttatgtttaatgga 4593924  T
Q  198 agattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttgg 297  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||    
T  4593925 agattaattttgaacaaaagagataattagatgacatttagggatttga--------gatttaggaatttgatattcaatttgggaatattgatttttgg 4594016  T
Q  298 ttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    |||| ||||     |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  4594017 ttcatggactacgatgaccattttctactttcactttggtccctgtgacacctcatatgcgccacatcatcacttaaca 4594095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 127 - 416
Target Start/End: Complemental strand, 2465044 - 2464759
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||| ||  |   | |||||||||| |||||| | ||||||||||| ||| |||||    
T  2465044 tgtcagtgacctaactgatagtaaatatgcacagtcagggacctaacagtaggt---tggtgtttaatggaagattgactttgaacaaaaaagataatta 2464948  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  2464947 gatgacatttaaggatttaagatttaaggatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctact 2464848  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| |        ||||||||||||||||||||||||| ||||    
T  2464847 ttcactttggtccctgtgacacctcatatgcgccacatcatcacttaaca-aatttttttaacgtcagagactaaagtgataacgtaagt 2464759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 127 - 376
Target Start/End: Original strand, 40612407 - 40612653
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||  |   | |||||||||| |||||| ||||||||||||||||| |||||    
T  40612407 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaggt---tggtgtttaatggaagattgattttgaacaaaagagataatta 40612503  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||| |||||||||||| ||||||| ||||||||| ||||| ||||||||||| | |||||||||||||||||||||||| |||| |||||||||||||    
T  40612504 gatgatatttagggatttaagatttagggatttagggatttgttattcaatttgggcatattgatttttggttcagggaccaaagtaaccattttctact 40612603  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||||||||| ||||||||||  ||||||||| ||||||||||||||    
T  40612604 ttcactttggtccttgtgacacctcatatgcgccatatcatcacttaaca 40612653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 127 - 375
Target Start/End: Complemental strand, 8074825 - 8074580
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||| ||  |   | |||||||||| |||||| |||||||||| |||||| |||||    
T  8074825 tgtcagggacctaacttatagtaagtatgcacagtcagggagctaacagtaggt---tggtgtttaatgtaagattgattttgaacagaagagataatta 8074729  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     ||||||||||  ||||| ||||||| |||||| || ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  8074728 gatgacatttaaagatttaagatttagggatttggggatttgatattcaatttgggcatattgatttttggttcagggaccaaagtgaccattttctact 8074629  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaac 375  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  8074628 ttcactttggtacctgtgacacctcatatgcgccacatcatcacttaac 8074580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 127 - 416
Target Start/End: Complemental strand, 4593229 - 4592951
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||  |   | ||||||||||||||||| ||||||||||||||||| |||||    
T  4593229 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtatgt---tggtgtttaatgaaagattgattttgaacaaaagagataatta 4593133  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| | |||| ||||||| ||||||      || || ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  4593132 gatgacatttaagaatttaagatttagggattt------tttattttcaatttgggcatattgatttttggttcagggaccaaagtgaccattttctact 4593039  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  4593038 ttcactttggtccctgtg-cacctcatatgcgccacatcatcacttaacaga-tttttttaacgtcagggactaaagtgataacggaagt 4592951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 127 - 376
Target Start/End: Complemental strand, 14890144 - 14889898
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| |||| |||| |||||||||||||| | ||||||||||||||  |  |   | |||||||||| |||||| ||||||||||||||| | || ||    
T  14890144 tgtcagagaccaaactaatagtaagtatgcacaatcagggacctaacagcagat---tggtgtttaatggaagattgattttgaacaaaagaaataacta 14890048  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| |||||| ||||||| ||||||||  | ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  14890047 gatgacatttaaggatttaagatttagggatttagcgaattgatattcaatttgggcatattgatttttggttcagggaccaaagtgaccattttctact 14889948  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    || |||||||||||| ||||||||  |||||| |||||||||||||||||    
T  14889947 tttactttggtccctatgacacctcatatgcgtcacatcatcacttaaca 14889898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 127 - 376
Target Start/End: Complemental strand, 28590077 - 28589828
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| ||  |   | |||||||||| |||||| ||||||||||||| | | ||| |    
T  28590077 tgtcagggacctaactgatagtaagtatgcacagtcagagacctaacagtaggt---tggtgtttaatggaagattgattttgaacaaaaaaaaaaataa 28589981  T
Q  227 t---atgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttct 323  Q
    |   |||||||||| |||||| || ||||  |||||||  ||||||||||||||||  | |||||||||||||||||||||||| |||||||||||||||    
T  28589980 ttacatgacatttaaggatttaaggtttagagatttagtgatttgatattcaattttggtatattgatttttggttcagggaccaaagtgaccattttct 28589881  T
Q  324 actttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||| |||||||||||| |||| |||  ||||||||||||||||||||||||    
T  28589880 acttttactttggtccctatgacccctcatatgcgccacatcatcacttaaca 28589828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 129 - 416
Target Start/End: Original strand, 545794 - 546069
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattata 228  Q
    |||||| |||||||||||||||||||||| |||||||||||||||| ||  | |||   |||||||| |||||| |||  |||||||||||| ||||| |    
T  545794 tcaggggcctaactgatagtaagtatgcacagtcagggacctaacagtaggttagt---gtttaatggaagattgattcagaacaaaagagataattaga 545890  T
Q  229 tgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctacttt 328  Q
    |||||||||  ||||| ||||||| ||||||        | ||||||||||| | |||||||||||||||||| ||||| ||||||| ||||||||||||    
T  545891 tgacatttaacgatttaagatttagggattt--------gttattcaatttgggcatattgatttttggttcaaggaccaaagtgactattttctacttt 545982  T
Q  329 cactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||| ||||||||||  |||||| || |||||||||||||| |        |||||||| |||||||||||||||||||||    
T  545983 cactttggtccttgtgacacctcatatgcgtcatatcatcacttaaca-aatttttttaacgtcagggactaaagtgataacggaagt 546069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 189 - 350
Target Start/End: Complemental strand, 18004970 - 18004813
Alignment:
Q  189 tttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatatt 288  Q
    ||||||| ||||||||| |||||||| ||||||||||| || ||||||| |||||||||||    ||||||||| ||||||||||||||||| | |||||    
T  18004970 tttaatggaagattaatattgaacaagagagagaattagataacatttaaggatttgagat----ggatttagggatttgatattcaatttggggatatt 18004875  T
Q  289 gatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    || ||||| |||||||||| ||||||| |||||||||||||| ||| ||| |||||||||||    
T  18004874 gaattttgattcagggaccaaagtgactattttctactttcattttagtctctgtgacacct 18004813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 127 - 416
Target Start/End: Original strand, 32641491 - 32641759
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||| |||||||||||||| |||||||||| ||| |||||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| |||||    
T  32641491 tgtcaaggacctaactgataataagtatgcacagttagggacctaacagtaggt---tggtgtttaatggaagattgattttgaacaaaaaagataatta 32641587  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     ||||||||                ||||||||||| |||| |||||||||||| | |||||||||||||||| ||||| | |||| |||||||| ||||    
T  32641588 gatgacatt----------------aaggatttagggatttcatattcaatttggggatattgatttttggttgagggatcaaagtaaccattttttact 32641671  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    |||| |||||||||||||| ||||  ||||||||||||||||||||||||||        |||||||| || ||||||||||||||||||    
T  32641672 ttca-tttggtccctgtgatacctcatatgcgccacatcatcacttaacata-tttttttaacgtcagggattaaagtgataacggaagt 32641759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 127 - 348
Target Start/End: Complemental strand, 9537410 - 9537199
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatga-aagattaattttgaacaaaagagagaatt 225  Q
    |||||| ||||||| |||||||||||||||| ||||| |||||||| | ||| |   | ||||||||||  |||||| | ||||||||||||||||||||    
T  9537410 tgtcagagacctaaatgatagtaagtatgcacagtcaaggacctaatagtaagt---tggtgtttaatgggaagattgactttgaacaaaagagagaatt 9537314  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
    | |||||||||| |||||| ||||||| ||||||        || |||||||||| | ||||||||||||| |||||||| | ||||||| |||||||||    
T  9537313 agatgacatttatggattttagatttagggattt--------gagattcaatttggggatattgatttttgattcagggatcaaagtgactattttctac 9537222  T
Q  326 tttcactttggtccctgtgacac 348  Q
    ||||||||| ||| |||||||||    
T  9537221 tttcactttagtcactgtgacac 9537199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 184 - 350
Target Start/End: Original strand, 32555323 - 32555494
Alignment:
Q  184 ttgtgtttaatgaaagatta-attttgaacaaaagagagaattatatgacatttagggatttgag-atttaa----ggatttaggaatttgatattcaat 277  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||| |||| ||||||||||||||| ||| ||    |||||||||||||||| ||| | |    
T  32555323 ttgtgtttaatggaagatttgattttgatcaaaagagagaattagatgagatttagggatttgaggattgaattcgggatttaggaatttgagatttagt 32555422  T
Q  278 ttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
     ||||| |||||||||| |||||||| ||| ||||||| |||||||||||||||||| |||| ||||||||||    
T  32555423 atgagattattgattttcggttcaggaacc-aagtgacaattttctactttcactttagtccatgtgacacct 32555494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 27720827 - 27720714
Alignment:
Q  135 acctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaattatatgaca 233  Q
    |||||||||||| |||||||||| | | |||||||||| | |||   ||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  27720827 acctaactgataataagtatgcacaattagggacctaatagtaa---agttgatgtttaatgaaagattgattttgaacaaaagagagaattatatgata 27720731  T
Q  234 tttagggatttgagatt 250  Q
    ||||||||||| |||||    
T  27720730 tttagggatttaagatt 27720714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 34173538 - 34173434
Alignment:
Q  247 gatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgac 346  Q
    |||||| ||||||||  |||||| |||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||||| ||| ||||||||||     
T  34173538 gatttagggatttagtgatttgaaattcaatttggggatattgatttttggttcagagaccaaagtgatcattttctactttcagtttagtccctgtgat 34173439  T
Q  347 acctt 351  Q
    |||||    
T  34173438 acctt 34173434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 9537850 - 9537948
Alignment:
Q  178 attaagttg-tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattca 275  Q
    ||||||||| ||||||||| |||||| |||||||||||| |||||||||| || ||||||||| |||||||||||| ||||||||| | |||| |||||    
T  9537850 attaagttgatgtttaatggaagattgattttgaacaaaggagagaattagataacatttaggaatttgagatttagggatttagggaattgagattca 9537948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 21069604 - 21069540
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatt 250  Q
    ||||||||||||| ||| |||||||| |||| ||||||||| |||||||||||||||||||||||    
T  21069604 gtgtttaatgaaatattgattttgaagaaaatagagaattagatgacatttagggatttgagatt 21069540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 13651043 - 13651106
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||| ||||||||||||    
T  13651043 atattgattttcggttcagggactaaagtgaccattttttactttcactttagtccctgtgaca 13651106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 37072800 - 37072733
Alignment:
Q  283 aatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||| |||||||||||  ||||||| |||||||||||||| |||||||| ||||||||||    
T  37072800 aatattgattttcggttcagggactaaagtgactattttctactttcattttggtccatgtgacacct 37072733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 2314387 - 2314449
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgacca 317  Q
    |||||||||||||||||||||||||| | ||||| | |||||||||||||||| |||||||||    
T  2314387 gatttaggaatttgatattcaatttggggatattaaattttggttcagggaccaaagtgacca 2314449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 21069557 - 21069480
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||| |||||| |||||| |||||||||||||||||  |||||||||  ||| |||||||||||||||||||||||    
T  21069557 atttagggatttgagattcaagttgagaatattgattttcagttcaggga-tcaaatgaccattttctactttcacttt 21069480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 13650990 - 13651031
Alignment:
Q  133 ggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  13650990 ggacctaactaatagtaagtatgcatagtcagggacctaaca 13651031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 30970361 - 30970296
Alignment:
Q  188 gtttaatgaaagatta-attttgaacaaaagagagaattatatgacatttagggatttgagattta 252  Q
    |||||||| ||||||  ||||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  30970361 gtttaatgcaagatttgattttgaacaaaatagagaattgtatgacatttaggaatttgagattta 30970296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 16979252 - 16979176
Alignment:
Q  265 tttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccct 341  Q
    ||||| ||||| |||||| ||||||||||||| |||||| ||| ||||||||||||| ||  |||||||| ||||||    
T  16979252 tttgagattcagtttgaggatattgatttttgattcaggaaccaaagtgaccattttttatcttcactttagtccct 16979176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 350
Target Start/End: Original strand, 578625 - 578720
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||| ||| ||| |||||||||  | ||||||||||| |||||||||||| |||||| |||| | |||||||| ||| |||| ||| ||||||    
T  578625 gatttagaaatctgagattcaatttagggatattgattttcggttcagggaccaaagtgatcattctttactttcattttagtccatgtcacacct 578720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 31946935 - 31946990
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtcc 339  Q
    ||||||||||| | |||||||||| ||||||||||||| |||||||||||| ||||    
T  31946935 atattgattttcgattcagggaccaaagtgaccattttttactttcactttagtcc 31946990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 19186055 - 19186100
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||    
T  19186055 tcagggacctaactgatagtaagtatacacagtcagggatctaaca 19186100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 12445299 - 12445363
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||| ||||||| | | |||||| ||||||||||||| ||||| |||| ||||||||    
T  12445299 atattgattttttgttcaggtatcgaagtgatcattttctacttttactttagtccatgtgacac 12445363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 19271604 - 19271528
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttg-gttcagggacccaagtgaccattttctactttcactttggtcc 339  Q
    |||||||||| |||||| | ||||||| ||||  ||||||||||  ||||||| |||||||||||||||||| ||||    
T  19271604 atttgatatttaatttggggatattgaattttcagttcagggactaaagtgacaattttctactttcactttagtcc 19271528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 23773186 - 23773226
Alignment:
Q  134 gacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  23773186 gacctaactaatagtaagcatgcatagtcagggacctaaca 23773226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 578098 - 578051
Alignment:
Q  247 gatttaaggatttaggaatttgatattcaatttgagaatattgatttt 294  Q
    |||||| |||||||| ||||||| || |||||||||||||||||||||    
T  578098 gatttagggatttagaaatttgagatccaatttgagaatattgatttt 578051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 9537945 - 9537992
Alignment:
Q  298 ttcagggacccaagtgaccattttctactttcactttggtccctgtga 345  Q
    |||||||||| ||||||||||||| |||||||||||| |||| |||||    
T  9537945 ttcagggaccaaagtgaccattttatactttcactttagtccatgtga 9537992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 19185981 - 19186028
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||||||||||||||| ||||||||| || |||||| |||||||||    
T  19185981 tgtcagggacctaactgacagtaagtatacaaagtcagagacctaaca 19186028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 28865010 - 28865057
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||||||| |||||||| |||||||||||||| ||| |||||||||    
T  28865010 tgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 28865057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 16611929 - 16611879
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||||||||||||||||||   |||||| |||||||||| ||||||||    
T  16611929 atattgatttttggttcagggattaaagtgatcattttctacattcacttt 16611879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 19186114 - 19186175
Alignment:
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||||||| | |||| ||| ||||||| ||||| |||||||||||| |||||||||||||    
T  19186114 attgatttttgatgcagg-accaaagtgactattttttactttcacttttgtccctgtgacac 19186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 16611847 - 16611818
Alignment:
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  16611847 aacgtcagagactaaagtgataacggaagt 16611818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 23773301 - 23773338
Alignment:
Q  137 ctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  23773301 ctaactaatagtaagtatgcacagtcagggacctaaca 23773338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 62)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 42477880 - 42477507
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||| ||||||| |||||||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42477880 tatcatttgaatatattttgagcttttgattattgtatgctcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 42477781  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    |||||| |||||| ||||    
T  42477780 agatgctaatagatttgctaattcattgtcagggacctaactgatagtaagtatgcacagtcagggacctaacattaa----gttgtgcttaatggaaga 42477685  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||  ||||||||||    
T  42477684 ttaattttgaacaaaagagagaattagatgacatttagggatttgagatttaagtatttaggaatttgatattcaatatgggaatattagtttttggttc 42477585  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacata 378  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  42477584 agggaccaaagtgatcattttctactttcactttggtccctgtgacacctcatatgcgccacatcatcacttaacata 42477507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 48788299 - 48788705
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| |||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48788299 tatcatttgaatatatcttgagctcttgattattgtatgctcg-gcctacgaggtagagatatgaattatcatgtgaatataacaataatcaagaataat 48788397  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| ||||| |||||  |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||    ||||||||||||| ||||    
T  48788398 agatgctaatgtatttgctaattcattgtaagggacctaactgatagtaagtatgcacagtcagggacctaacaataa----gttgtgtttaatggaaga 48788493  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  48788494 ttaattttgaacaaaagagagaattaaatgaca---agggatttgagatttaagaatttaggaatttgatattcaatttgtgaatattgatttttggttc 48788590  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||| |        ||||||||||||||    
T  48788591 agggaccaaagtgaccattttctactttcactttggtccttgtgacacctcatatgcgccacatcatcacctaaca-aatttttttaacgtcagagacta 48788689  T
Q  401 aagtgataacggaagt 416  Q
    ||||||||||||||||    
T  48788690 aagtgataacggaagt 48788705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 7258774 - 7258404
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| ||||  ||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  7258774 tatcatttgaatatatcttgagctcttgattattgtatgctcagacctacggggtaaatatatgaattatcatgtgaatataacaataatcaagagtaat 7258675  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    |||||||||||||||||  |||| ||||||| ||||||||| ||||||||||||||| ||| ||||| |||||| ||| |    ||||||||||| ||||    
T  7258674 agatgttaatggatttgctaattaattgtcatggacctaacagatagtaagtatgcacagttagggatctaacaataaat----tgtgtttaatggaaga 7258579  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7258578 ttaattt-gaacaaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttc 7258480  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  7258479 agggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgcgctacatcatcacttaaca 7258404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 35728198 - 35727827
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||| |||||||| || |||| ||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35728198 tatcatttgaatatatcttgaactcttgatcactgtatgctcagacctacgaggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 35728099  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| || |||||| ||| |    ||||||||||| ||||    
T  35728098 agatgctaatggatttgctaattcattgtcagggacctaactgatagtaagtatgcacagtcagtgatctaacaataaat----tgtgtttaatggaaga 35728003  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||||     
T  35728002 ttaattttgaacaaaagagagaattagatgacatttagggatttgagatttaggaatttagaaatttgatattcaatttgggaatattgatttttggtta 35727903  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    | ||| | |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  35727902 aaggatcaaagtgaccattttctactatcactttggtccctgtgacacctcatatgcgccacatcatcacttaaca 35727827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 44333637 - 44333266
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||| ||||||||||||  |||| | ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44333637 tatcatttgaatatatcttaagctcttgattattgtatgcccaaacctgcgaggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 44333538  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||    |||||||||  || ||||    
T  44333537 agatgctaatggatttgctaattcatcgtcagggacctaactgatagtaagtatgcacagtcaaggacctaacaataa----gttgtgtttgttggaaga 44333442  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    ||||| ||||||||| ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44333441 ttaatcttgaacaaatgagagaattagttgaaatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttc 44333342  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  44333341 agggaccaaagtgaccattttctactttcacgttggtccctgtgacacctcatatgcgccacatcatcacttaaca 44333266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 48646549 - 48646139
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||| |||||||||||| |||| |||| |||   |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48646549 tatcatttgaatataccttgagctcttggttactgtatgctcggacctatggggttgagatatgaattatcatgtgaatataacaataatcaagagtaat 48646450  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||    | |||||||| ||||||| ||||    
T  48646449 agatgctaatggatttgcttattcattgtcagggacctaactgatagtaagtatgcacagtcagggacctaac----agtaagttgtatttaatggaaga 48646354  T
Q  201 ttaattttgaacaaaagagagaatt-atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggtt 299  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||| ||||||||||    
T  48646353 ttaattttgaacaaaaaagagaattaagatgacatttagggatttgagatttagggatttaggaatttgatattcaatttagaaatattaatttttggtt 48646254  T
Q  300 cagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagact 399  Q
    || ||| | ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |||        |||| ||||||||    
T  48646253 caagga-caaagtgaccattttttactttcactttggtctctgtgacaccttatatgcgccacatcatcacttaatata-tttttttaacgacagagact 48646156  T
Q  400 aaagtgataacggaagt 416  Q
    |||||||||||||||||    
T  48646155 aaagtgataacggaagt 48646139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 134 - 416
Target Start/End: Original strand, 10898829 - 10899106
Alignment:
Q  134 gacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgaca 233  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||    ||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  10898829 gacctaactgatactaagtatgcatagtcagggacctaacagtaa----gttgtgtttaatggaagattaattttgaacaaatgagagaattagatgaca 10898924  T
Q  234 tttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactt 333  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||    
T  10898925 tttagggatttgagatgtaagaatttaggaatttgatattcaatttgggaatattgatttttggttcaaggaccaaagtgaccattttctactttctctt 10899024  T
Q  334 tggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    |||||||||||||||||  |||||||||||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  10899025 tggtccctgtgacacctcatatgcgccacatcatcacttaacaga-tttttttaacgtcagggactaaagtgataacggaagt 10899106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 45584083 - 45583792
Alignment:
Q  5 atttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaatagat 104  Q
    ||||||||||||||||||||||||||||  |||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45584083 atttgaatatatcttgagctcttgattattgtatgctcaaacctgcggggtagagatataaattatcatgtgaatataacaataatcaagagtaatagat 45583984  T
Q  105 gttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaa 204  Q
    | |||| ||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |   | |||||||||| |||||| |    
T  45583983 gctaatcgatttgctaattcattgtcaatgacctaactgatagtaagtatgcatagtcagggacctaacagtaagt---tggtgtttaatggaagattga 45583887  T
Q  205 ttttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcaggg 304  Q
    |||||| ||||| ||| ||||| |||||||| | ||||||        | |||||||| ||||||||||||||||| | |||||||||||||||||||||    
T  45583886 ttttgatcaaaaaagataattagatgacattaaaggattt--------aagatttagggatttgatattcaatttggggatattgatttttggttcaggg 45583795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 132 - 416
Target Start/End: Original strand, 45584250 - 45584529
Alignment:
Q  132 gggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaattatatg 230  Q
    ||||| |||||||||||||||||||| |||||||||||||||| ||     |||| ||||||||| |||||| ||||||| ||||| ||| ||||| |||    
T  45584250 gggacttaactgatagtaagtatgcacagtcagggacctaacagtag----gttgatgtttaatggaagattgattttgatcaaaaaagataattagatg 45584345  T
Q  231 acatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  45584346 acatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattga-ttttggttcagggaccaaagtgaccattttctacattca 45584444  T
Q  331 ctttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||| | ||||||||  |||||||||||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  45584445 ctttggtccttatgacacctcatatgcgccacatcatcacttaacaga-tttttttaacgtcagggactaaagtgataacggaagt 45584529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 125 - 416
Target Start/End: Original strand, 30924763 - 30925041
Alignment:
Q  125 attgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaat 224  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| |||    
T  30924763 attgtcagggacctaactgatagtaagtatgcacagtcagagacctaacaataggt---tggtgtttaatggaagattgattttgaacaaaaaagataat 30924859  T
Q  225 tatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttcta 324  Q
    || |||||||||| |||||| ||||||| ||||||        ||||||||||||| | ||||||||||||||||||  || | ||||||||||||||||    
T  30924860 tagatgacatttaaggatttaagatttagggattt--------gatattcaatttggggatattgatttttggttcatagatcaaagtgaccattttcta 30924951  T
Q  325 ctttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||| || |||||||||||  |||||||||||||||||||||||| |        |||||||||||||||||| |||||||||||    
T  30924952 ctttcactttgatcactgtgacacctcatatgcgccacatcatcacttaacaga--ttttttaacgtcagagactaaagtaataacggaagt 30925041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 127 - 376
Target Start/End: Original strand, 48647191 - 48647437
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||||||||||||| |||||||||||||| | ||| |||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| |||||    
T  48647191 tgtcagggacctaactaatagtaagtatgcacaatcaaggacctaacagtaggt---tggtgtttaatggaagattgattttgaacaaaatagataatta 48647287  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||| ||||| |||||| ||||||| |||| |||| ||||| ||||||||||| | |||||||||||||||||||||||  ||||||||||||||||||    
T  48647288 gatgatatttaaggatttaagatttagggatatagggatttggtattcaatttgggcatattgatttttggttcagggacgaaagtgaccattttctact 48647387  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||||||||| ||||||||||  |||| | || ||||||||||||||    
T  48647388 ttcactttggtccttgtgacacctcatatgtgtcaaatcatcacttaaca 48647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 127 - 374
Target Start/End: Complemental strand, 10894718 - 10894474
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagaga-att 225  Q
    ||||||||||||||||| ||||||||||||| ||||||  |||||||||||  |   | |||||||||  |||||| |||||||| |||| | ||| |||    
T  10894718 tgtcagggacctaactggtagtaagtatgcacagtcagatacctaacattagat---tggtgtttaatagaagattgattttgaaaaaaaaaaagatatt 10894622  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
    | |||||||||| | |||| ||||||  ||||||||| ||||||||||||||||| | |||| |||||||||| |||||||  |||||||||||||||||    
T  10894621 agatgacatttaagaatttaagattttcggatttagggatttgatattcaatttggggatat-gatttttggtccagggactaaagtgaccattttctac 10894523  T
Q  326 tttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaa 374  Q
    |||||||||||| | |||||||||| |||||||||||||||||||||||    
T  10894522 tttcactttggtgcatgtgacacctcgtatgcgccacatcatcacttaa 10894474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 127 - 416
Target Start/End: Original strand, 7259441 - 7259717
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||   ||||  | |  ||||||||  |||||| ||||||| ||||| ||| |||||    
T  7259441 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaa---taatagattgatgtttaatagaagattgattttgagcaaaaaagataatta 7259537  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     | |||||||| |||||| ||||||| ||||||        ||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||| |    
T  7259538 gaggacatttaaggatttaagatttagggattt--------gatattcaatttggggatattaatttttggttcagggaccaaagtgaccattttcta-t 7259628  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  7259629 ttcactttggtccttgtgacacctcatatgcgccacatcatcacttaacaga-tttttttaacgtcagggactaaagtgataacggaagt 7259717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 127 - 376
Target Start/End: Original strand, 35728843 - 35729080
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgt-gtttaatgaaagattaattttgaacaaaagagagaatt 225  Q
    |||||||||||| ||||||||||||||||||  | ||||||||| ||| ||     ||||  |||||||| |||||| ||||||||||||||||| ||||    
T  35728843 tgtcagggacctgactgatagtaagtatgcac-gccagggacctcacagtag----gttgcagtttaatggaagattgattttgaacaaaagagataatt 35728937  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
    | |||||||||| |||||| ||||||| |||||||        |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  35728938 agatgacatttaaggatttaagatttagggattta--------atattcaatttgggaatattgatttttggttcagggaccaaagtgaccactttctac 35729029  T
Q  326 tttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    |||||||||||||| | | ||||||  ||||||||||||||||||||||||    
T  35729030 tttcactttggtccatataacacctcatatgcgccacatcatcacttaaca 35729080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 133 - 378
Target Start/End: Original strand, 44334213 - 44334446
Alignment:
Q  133 ggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgac 232  Q
    ||||||||||||||||||||||||| ||| ||| |||||| | ||  |   | ||||||||||||| | | ||||||||||||||||| ||||| |||||    
T  44334213 ggacctaactgatagtaagtatgcacagtaagg-acctaatagtaggt---tggtgtttaatgaaataatgattttgaacaaaagagataattagatgac 44334308  T
Q  233 atttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcact 332  Q
    ||||| | |||| ||||||| ||||||        ||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  44334309 atttaagaatttaagatttagggattt--------gatattcaatttggggatattgatttttggttcatggaccaaagtgactattttctactttcact 44334400  T
Q  333 ttggtccctgtgacaccttgtatgcgccacatcatcacttaacata 378  Q
    ||||||| ||||||| ||  |||| |||||||||||||||||||||    
T  44334401 ttggtccatgtgacatctcatatgtgccacatcatcacttaacata 44334446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 10895283 - 10895412
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10895283 tatcatttgaatatatcttgagctcttgattattgtatgctcagacctatggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 10895382  T
Q  101 agatgttaatggatttgtcaattcattgtc 130  Q
    | ||| |||||||||||  |||||||||||    
T  10895383 aaatgctaatggatttgctaattcattgtc 10895412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 128 - 332
Target Start/End: Complemental strand, 39708495 - 39708302
Alignment:
Q  128 gtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaa-ttaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||||||| |||||||||||||||| || |||||||||||||||| ||| ||||    ||||||||| |||||  |||||||||||||||||||||||    
T  39708495 gtcagggaccaaactgatagtaagtatacacagtcagggacctaacagtaagttaa----tgtttaatggaagatcgattttgaacaaaagagagaatta 39708400  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| | |||| ||||||| ||||||        || ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  39708399 gatgacatttaagaatttaagatttagggattt--------gaaattcaatttgagaatattgatttttggtttagggtccaaagtgaccattttctact 39708308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 320
Target Start/End: Complemental strand, 12221610 - 12221486
Alignment:
Q  196 aaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgattttt 295  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||| |||||||||||||||||| | |||||||| |||    
T  12221610 aaagattaattttgaacaaaagagagaattagatgacatttagagaattgagatttagggatttagaaatttgatattcaatttggggatattgatcttt 12221511  T
Q  296 ggttcagggacccaagtgaccattt 320  Q
    |||||||||||| || |||||||||    
T  12221510 ggttcagggaccaaattgaccattt 12221486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 228 - 416
Target Start/End: Complemental strand, 48777534 - 48777346
Alignment:
Q  228 atgacatttagggatttgagatttaaggatttaggaatttgatattcaattt-gagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
    |||||||||| |||||| | ||||| ||||||||| |||||| ||||||||| | | ||||||||||| |||||||| | | |||||||||||||||| |    
T  48777534 atgacatttaaggatttaaaatttagggatttagggatttgaaattcaattttggggatattgatttt-ggttcaggaatcaaagtgaccattttctatt 48777436  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||        |||||||  |||||||||||||||||||||    
T  48777435 ttcactttggtccctgtgacacctcatatgcgtcacatcatcacttaacatatttttttaaacgtcatggactaaagtgataacggaagt 48777346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 348
Target Start/End: Original strand, 7509259 - 7509419
Alignment:
Q  189 tttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatatt 288  Q
    ||||||| ||| || ||||||||||| |||| |||||| |||| |||||||||||||||||||| || |||||| |||||| |||||||||| | |||||    
T  7509259 tttaatggaaggttgattttgaacaagagagtgaattaaatgatatttagggatttgagatttaggggtttagggatttgagattcaatttggggatatt 7509358  T
Q  289 gatttttggttcagggacccaagtgacca-ttttctactttcactttggtccctgtgacac 348  Q
    ||||||||||| ||||||| ||||||| | ||||||||||||||||| |||| | ||||||    
T  7509359 gatttttggtttagggaccaaagtgactatttttctactttcactttagtccatatgacac 7509419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 374
Target Start/End: Original strand, 42478111 - 42478261
Alignment:
Q  223 attatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttc 322  Q
    |||| |||| ||||| |||||| ||||||| || |||||| ||||||||||||||| | | |||||||||||| ||||| ||||| ||||||||||||||    
T  42478111 attagatgatatttaaggatttaagatttatgggtttagggatttgatattcaattaggggatattgattttttgttcatggaccaaagtgaccattttc 42478210  T
Q  323 tactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaa 374  Q
    ||||||||||||| | ||| ||||||||  ||||||||||||||||| ||||    
T  42478211 tactttcactttgat-cctatgacacctcatatgcgccacatcatcaattaa 42478261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 127 - 347
Target Start/End: Original strand, 12223436 - 12223644
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagtt-gtgtttaatgaaagattaattttgaacaaaagagagaatt 225  Q
    |||||||||||||| |||||||||||||||| | ||||||||||||   ||| |||||| |||||||||| |||||| ||||||||| ||||||  ||||    
T  12223436 tgtcagggacctaa-tgatagtaagtatgcacattcagggacctaa---taa-taagttggtgtttaatggaagattgattttgaactaaagaggtaatt 12223530  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
    | |||||||||| ||||||||         ||||||| |||||| |||||||||| | |||||||||||||||||| ||| | ||||||| ||||| |||    
T  12223531 agatgacatttatggatttga--------aatttagggatttgagattcaatttggggatattgatttttggttcaaggatcaaagtgacaattttttac 12223622  T
Q  326 tttcactttggtccctgtgaca 347  Q
    ||||||||| || |||||||||    
T  12223623 tttcactttagttcctgtgaca 12223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 350
Target Start/End: Complemental strand, 43457788 - 43457623
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagaga--attatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgaga 283  Q
    |||||||||  | |||| |||||||||||||||||||  |||| |||| |||||||| ||||||||||   |||||| | |||||| |||||||||  |     
T  43457788 gtgtttaattgatgattgattttgaacaaaagagagagaattagatgatatttaggggtttgagatttggtgatttaaggatttgagattcaatttaggg 43457689  T
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||| |||||||||||    
T  43457688 atattgatttttggt-cagggaccaaagtgaccattttttactttcactttagtctctgtgacacct 43457623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 144 - 348
Target Start/End: Original strand, 34710156 - 34710349
Alignment:
Q  144 atagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatt 243  Q
    |||||||||||| ||||||||  |||||||| ||| |   |  |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  34710156 atagtaagtatgtatagtcagatacctaacagtaaat---tgatgtttaatgaaaaattaattttgaacaaaagagagaattagatgacatttaaggatt 34710252  T
Q  244 tgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgt 343  Q
    |||         |||||||| ||| | |||||||||||| || |||||||||| |||||||| | |||| || ||||| |||||||||||| ||| ||||    
T  34710253 tga--------aatttaggattttaaaattcaatttgaggatgttgatttttgattcagggatcaaagtaacaattttttactttcactttagtctctgt 34710344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 213 - 351
Target Start/End: Original strand, 46287219 - 46287353
Alignment:
Q  213 aaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagt 312  Q
    |||| ||||||||| |||||||||| | |||||||||||||||||||||| |||||||  |||||||  ||||||||||||||| || ||||||  ||||    
T  46287219 aaaaaagagaattagatgacatttaag-atttgagatttaaggatttagggatttgat--tcaatttaggaatattgatttttgatttagggactaaagt 46287315  T
Q  313 gaccattttctactttcactttggtccctgtgacacctt 351  Q
    ||| |||| ||||||||||||||||||||| ||||||||    
T  46287316 gactattt-ctactttcactttggtccctgggacacctt 46287353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 6680336 - 6680479
Alignment:
Q  197 aagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttg 296  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||        | |||||||||| | |||||||||||||    
T  6680336 aagattgattttgaacaaaagagagaattagatgatatttagggatttgagatttatgaattta--------aaattcaatttggggatattgatttttg 6680427  T
Q  297 gttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||| ||||||  || |||| |||||||||||||||||| |||||| ||||||    
T  6680428 gtttagggactaaaatgactattttctactttcactttagtccctttgacac 6680479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 33607271 - 33607385
Alignment:
Q  133 ggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgac 232  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||  || ||   |||||||| |||| | ||||| ||||||||||||||||| |||||    
T  33607271 ggacctaactgatagtaagtatgcaaagtcagggacctaacagtaggtaggt---gtttaatggaagaatgattttaaacaaaagagagaattagatgac 33607367  T
Q  233 atttagggatttgagatt 250  Q
    |||||||||||| |||||    
T  33607368 atttagggatttaagatt 33607385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 43461526 - 43461685
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaat 285  Q
    |||||||||| | |||| ||||||||| ||| ||||||||| ||||||    ||| |||||||||||  |||||||| |||||| ||||||||   | ||    
T  43461526 gtgtttaatggatgattgattttgaacgaaa-agagaattagatgaca----ggggtttgagatttagtgatttagggatttgagattcaattgagggat 43461620  T
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||| || | ||||||||||    
T  43461621 attgatttttggttcagggatcaaagtgaccattttttactttcactttagttcatgtgacacct 43461685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 341
Target Start/End: Original strand, 19433666 - 19433873
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| || ||||||||||||||||||||| | | |||||||||| | ||| |   | |||||||||| |||||| |||  |||||||| ||| |||||    
T  19433666 tgtcagagatctaactgatagtaagtatgcaca-taagggacctaatagtaagt---tggtgtttaatggaagattgatt--gaacaaaatagataatta 19433759  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||| |||||||| ||||||  ||| || || ||| || |||||||||| | |||||||||||| ||||||| ||| || ||||||||||||||     
T  19433760 aatgacattcagggatttcagattttgggagttggggattagagattcaatttggggatattgatttttagttcaggaaccaaaatgaccattttctac- 19433858  T
Q  327 ttcactttggtccct 341  Q
    |||||||| ||||||    
T  19433859 ttcactttagtccct 19433873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 5929920 - 5930077
Alignment:
Q  185 tgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaa 284  Q
    |||||||||||||||| | ||||||||  ||||||||||||| |||||||||| ||||||||        |||||||  |||||| |||||||||| |||    
T  5929920 tgtgtttaatgaaagactgattttgaatgaaagagagaattaaatgacatttatggatttga--------gatttagagatttgagattcaatttgggaa 5930011  T
Q  285 tattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||| | |||||| | |||||| ||||||  ||||||||||| |||  ||||||||||    
T  5930012 tattgatttttgatccagggatcaaagtgatcatttttaactttcactttagtctatgtgacacct 5930077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 32794543 - 32794657
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| || |||| | |||||||||||||| |||||||||||||||| ||| |   |||||||||||| || ||| |||||||||||||||||| ||||    
T  32794543 tgtcagcgaactaattaatagtaagtatgcacagtcagggacctaacaataagt---ttgtgtttaatggaaaattgattttgaacaaaagagagcatta 32794639  T
Q  227 tatgacatttagggattt 244  Q
     |||||||| ||||||||    
T  32794640 gatgacattcagggattt 32794657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 348
Target Start/End: Complemental strand, 39824471 - 39824306
Alignment:
Q  186 gtgtttaatgaaagatta-attttgaacaaaagagagaattatatgacatttagggatttgagatttaa-----ggatttaggaatttgatattcaattt 279  Q
    |||||||||| ||||||  |||||||||||||| | |||||| |||| ||||| |||||||||  ||||     | ||||| | |||||| |||||||||    
T  39824471 gtgtttaatggaagatttgattttgaacaaaagggtgaattaaatgagatttaaggatttgaggattaaatttagaatttatggatttgaaattcaattt 39824372  T
Q  280 gagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    | |||||||||||| |   |||||| |  |||||||||||||||||||||||||| |||||||||||||    
T  39824371 gggaatattgatttat---tcaggggctaaagtgaccattttctactttcactttagtccctgtgacac 39824306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 8048653 - 8048730
Alignment:
Q  271 attcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||| | ||||| ||||| |||||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  8048653 attcaatttgtggatattaattttcggttcagggaccaaagtgaccattttctactttcactttagtccatgtgacac 8048730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 348
Target Start/End: Complemental strand, 34707977 - 34707777
Alignment:
Q  138 taactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaa-tgaaagattaattttgaacaaaagagagaattatatgacattt 236  Q
    |||||||||||||||||||||| ||| ||| || | | ||| |   | |||||||| || || ||| |||||||||||||||||||||||||||||||||    
T  34707977 taactgatagtaagtatgcataatcatggatcttatagtaagt---tggtgtttaaatggaaaattgattttgaacaaaagagagaattatatgacattt 34707881  T
Q  237 agggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttgg 336  Q
    | | ||||||||        |||||| |||||| |||||| ||| | ||||| ||||||||| || ||| | |||||  ||||||||| |||||||||      
T  34707880 aagaatttgaga--------tttagggatttgaaattcaacttggggatattaatttttggtccatggaacaaagtgttcattttctattttcactttat 34707789  T
Q  337 tccctgtgacac 348  Q
    ||||||||||||    
T  34707788 tccctgtgacac 34707777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 24935045 - 24934954
Alignment:
Q  257 tttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||| |||||| |||||||||  ||||||||||||| |||| ||||| | |||||||||||||||||||||||||| || | ||||||||    
T  24935045 tttagggatttgagattcaatttaggaatattgattttcggtttagggatcaaagtgaccattttctactttcactttagttcatgtgacac 24934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 24287721 - 24287655
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||| |||||||||||||||||  ||| |||||||||||||||||||||| |||||||||||||||    
T  24287721 atattcatttttggttcagggactaaagcgaccattttctactttcactttagtccctgtgacacct 24287655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 347
Target Start/End: Original strand, 24935511 - 24935657
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaa----ggatttaggaatttgatattcaatttgagaatattgatttttggtt 299  Q
    |||||||||||||||| |||||| | || |||||||||||  ||||| ||    |||||||||||||||| ||||||||||   |||| ||||||| |||    
T  24935511 attttgaacaaaagagggaattaaaagatatttagggattgaagattaaatttgggatttaggaatttgagattcaatttggtgatat-gatttttagtt 24935609  T
Q  300 cagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    |||||| | |||||||  |||| |||||||||||| |||| |||||||    
T  24935610 cagggatcaaagtgacatttttttactttcactttagtccttgtgaca 24935657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 46286772 - 46286690
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtc 338  Q
    ||||||| |||||| ||| |||||| |||||||||||||||||||| ||| | ||||||| |||||||||||||| |||||||    
T  46286772 atttagggatttgaaatttaatttgggaatattgatttttggttcaaggatcaaagtgactattttctactttcattttggtc 46286690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 44529663 - 44529541
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaatt 225  Q
    ||||| |||| ||| |||||||||||||||| |||||||||| |||    ||| |||||| | ||||||| | |||| ||||||||||||||||| ||||    
T  44529663 tgtcatggacttaaatgatagtaagtatgcacagtcagggacttaa----aatgaagttgatttttaatggatgattgattttgaacaaaagagataatt 44529568  T
Q  226 atatgacatttagggatttgagattta 252  Q
    | ||||||||||||| ||| |||||||    
T  44529567 agatgacatttaggggtttaagattta 44529541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 347
Target Start/End: Complemental strand, 2677241 - 2677094
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaag-----gatttaggaatttgatattcaatttgagaatattgatttttggt 298  Q
    |||||||||||| ||| |||||| |||| |||||||||||||||  ||||      ||| |||| |||||| ||| |||||  | |||||||||||| ||    
T  2677241 attttgaacaaa-gagggaattagatgagatttagggatttgaggattaaattcgagatctagggatttgagatttaatttagggatattgatttttagt 2677143  T
Q  299 tcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||| | |||||| ||||||||||||||||||| |||| |||||||    
T  2677142 tcagggaacaaagtgatcattttctactttcactttagtccatgtgaca 2677094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 8375505 - 8375569
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||| ||| |||||||||    
T  8375505 atattgatttttggtttagggactaaagtgaccattttctactttcactttagtctctgtgacac 8375569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 330
Target Start/End: Complemental strand, 8047145 - 8047010
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaata 286  Q
    |||||||||||| ||| || |||||||||||||| ||||| |||| |||||| ||||||||||||| |||||||        | |||||||||| | |||    
T  8047145 tgtttaatgaaatattgatattgaacaaaagagataattagatgatatttagtgatttgagatttagggattta--------aaattcaatttggggata 8047054  T
Q  287 ttgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    || ||| || ||||| ||| | ||||||| ||||||||||||||    
T  8047053 ttaattgtttgttcaaggatcaaagtgactattttctactttca 8047010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 33607368 - 33607462
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||| |||| | |||||||||| | ||||||||||||||| || ||||| ||||||||| ||| |||||||||||| |||| | ||||||||    
T  33607368 atttagggatttaagattcaatttggggatattgatttttggtccaaggaccaaagtgaccaatttttactttcactttagtccatttgacacct 33607462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 24287842 - 24287795
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  24287842 tgtcagggaccaaactgatagtaagtatgcatagtcaaggacctaaca 24287795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 32793543 - 32793423
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaatt 225  Q
    |||||| || ||||||||||||||||||||| | |||| ||| ||     || ||||||| | |||||||||||||| ||||||||||||| ||||||||    
T  32793543 tgtcagagatctaactgatagtaagtatgcacaatcagagacttac----aaataagttggtatttaatgaaagattgattttgaacaaaatagagaatt 32793448  T
Q  226 atatgacatttagggatttgagatt 250  Q
    | | |||||| ||| ||||||||||    
T  32793447 agaagacattcaggtatttgagatt 32793423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 44529270 - 44529181
Alignment:
Q  264 atttgatattcaatttgagaatattgattt----ttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||| |||||||||||| ||||||||||    |||||||||||  | ||||||||||||| |||||||||||| |||| ||||||||||    
T  44529270 atttgagattcaatttgaggatattgatttttaattggttcaggggtcaaagtgaccatttt-tactttcactttagtccttgtgacacct 44529181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 48249883 - 48249823
Alignment:
Q  209 gaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttga 269  Q
    |||||||||||||| ||||||||||| || |||||| |||||||  |||||||||||||||    
T  48249883 gaacaaaagagagagttatatgacatgtaaggatttaagatttagtgatttaggaatttga 48249823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 347
Target Start/End: Original strand, 385448 - 385594
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttga-gatttaag----gatttaggaatttgatattcaatttgagaatattgatttttggt 298  Q
    ||||||||||||| || ||||| ||||| |||||||||||||| |||| ||     |||||| | |||||| |||||| ||| || |||||| ||| |||    
T  385448 attttgaacaaaaaagggaatt-tatgagatttagggatttgatgattaaattcgagatttaaggatttgagattcaacttggga-tattgactttcggt 385545  T
Q  299 tcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||||  ||||||||||||||||||| ||||||  ||||| |||||    
T  385546 tcagggactaaagtgaccattttctacttgcactttaatccctatgaca 385594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 33061148 - 33061081
Alignment:
Q  186 gtgtttaatgaaagat-taattttgaacaaaagagagaattatatgacatttagggatttgagattta 252  Q
    |||||||||| ||||| | ||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  33061148 gtgtttaatggaagatatgattttgaacaaaagagataattaaataacatttagggatttaagattta 33061081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 22621366 - 22621304
Alignment:
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||||| ||  ||| |||||| ||||||||||||||||||| |||| ||||||||    
T  22621366 attgatttttggtttagataccaaagtgatcattttctactttcactttagtccttgtgacac 22621304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 32793412 - 32793346
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||| ||||||| |||||||||| || ||| |||||| |||||||||||| |||| ||||||||||    
T  32793412 atattcatttttgattcagggaccaaaatgatcattttttactttcactttagtccatgtgacacct 32793346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 39708526 - 39708486
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacc 169  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  39708526 tcagggaccaaactgatagtaagtatacatagtcagggacc 39708486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 48787658 - 48787611
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||| |||||||||||||||| |||||| |||||| |||||||||    
T  48787658 tgtcaggaacctaactgatagtaaatatgcacagtcagtgacctaaca 48787611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 8870220 - 8870154
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||| ||||||| ||||||||||| |||| | ||||||||||||||| ||| |||  ||||||||||    
T  8870220 atatcgatttttagttcagggaccaaagtaatcattttctactttcattttagtctttgtgacacct 8870154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 8870909 - 8870955
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    |||| ||||||| ||||||||||| |||| |||||||||||||||||    
T  8870909 atatcgatttttagttcagggaccaaagtaaccattttctactttca 8870955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 330114 - 330077
Alignment:
Q  133 ggacctaactgatagtaagtatgcatagtcagggacct 170  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  330114 ggacctaactgatagtaagtatgcacagtcaggaacct 330077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 27067996 - 27067959
Alignment:
Q  311 gtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  27067996 gtgaccattttctactttcactttagtctctgtgacac 27067959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 27210317 - 27210354
Alignment:
Q  311 gtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  27210317 gtgaccattttctactttcactttagtctctgtgacac 27210354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 33060929 - 33060900
Alignment:
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  33060929 aacgtcagagactaaagtgataacggaagt 33060900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #60
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 43461732 - 43461761
Alignment:
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  43461732 aacgtcagagactaaagtgataacggaagt 43461761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #61
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 44530519 - 44530568
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactt 333  Q
    ||||| |||||||||||||||||  ||||||||| ||| |||||||||||    
T  44530519 atattaatttttggttcagggactaaagtgaccagtttttactttcactt 44530568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 385089 - 385010
Alignment:
Q  254 ggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||| |||||||| ||| |||||| || |||||||||| | ||||  || | ||||||| ||||||||||||||||||    
T  385089 ggatttaagaatttgagatttaatttggga-tattgattttcgattcatagatcaaagtgacaattttctactttcacttt 385010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 17701019 - 17700608
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||||| |||||||||||||  |||| || |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17701019 tatcatttgaatatatctggagctcttgattattgtatgcttagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 17700920  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||    ||||||||||||| ||||    
T  17700919 agatgttaatagatttgctaattcattgtcagggacctaactgatagtaagtatgtacagtcagggacctaacagtaa----gttgtgtttaatggaaga 17700824  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  || ||||||||||| ||||    
T  17700823 ttaattttgaacaaaatagagaattatatgacatttaaggatttgagatttaagaatttaggaatttgatattcaattttggattattgattttttgttc 17700724  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||  |||||| |        |||||||| |||||    
T  17700723 agggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgcggcacatcatcgtttaacagattttttttaacgtcagggacta 17700624  T
Q  401 aagtgataacggaagt 416  Q
    ||||||||||||||||    
T  17700623 aagtgataacggaagt 17700608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 416
Target Start/End: Original strand, 36279944 - 36280350
Alignment:
Q  5 atttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaatagat 104  Q
    ||||||||||||||||||||||||||||  |||| ||||  |||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||    
T  36279944 atttgaatatatcttgagctcttgattattgtatgctcagacctacggggtagagttatgaattattatatgaatataacaataatcaagactaatagat 36280043  T
Q  105 gttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaa 204  Q
    | ||||| |||||  ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    |||||||||||||| ||||||||    
T  36280044 gctaatgaatttgctaattcattgtcagggacctaactgatagtaattatgcacagtcagggacctaacatta----agttgtgtttaatggaagattaa 36280139  T
Q  205 ttttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcaggg 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  36280140 ttttgaacaaaagagagaattaaatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggtttaggg 36280239  T
Q  305 acccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagt 404  Q
    ||  ||||||||||||||| |||||| |||||||| ||||||||||  ||||||||||||||||||||||||||        |||||||| |||||||||    
T  36280240 actaaagtgaccattttcttctttcattttggtccgtgtgacacctcatatgcgccacatcatcacttaacata-tttttttaacgtcagggactaaagt 36280338  T
Q  405 gataacggaagt 416  Q
    ||||||||||||    
T  36280339 gataacggaagt 36280350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 55389093 - 55389465
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| ||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||||     
T  55389093 tatcatttgaatatatcttgagctcttgattattgtatgctcagacctacggaatagagatatgaattatcatgtgaatataacaataatcaagagtaa- 55389191  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||| ||||||  |||||||||||| |||||||||||||||||| |||||| ||||||||||||||     | |||||||||||||||| || |    
T  55389192 agatgataattgatttgctaattcattgtcatggacctaactgatagtaaatatgcacagtcagggacctaa----gagtaagttgtgtttaatggaata 55389287  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  55389288 ttaattttgaacaaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgattttcggttc 55389387  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacata 378  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  55389388 agggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgtgccacatcatcacttaacata 55389465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 53958725 - 53959133
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| || |  ||||   ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53958725 tatcatttgaatatatcttgagctcttgattattgtatgctaagacctaaaaggtagagatatgaattatcatgtgaatataacaataatcaaaagtaat 53958824  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||| ||  ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||  ||    ||||||||||||| ||||    
T  53958825 agatgctaatggatctgctaattcattgtcagagacctaactgatagtaagtatgcacagtcagggaccttacaacaa----gttgtgtttaatggaaga 53958920  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    ||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53958921 ttaattt-gaacaaaagagagaattagatgacatttaag-atttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttc 53959018  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    |||| || ||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||| |        ||||||||||||||    
T  53959019 aggggccaaagtgacaattttctactttcactttggtccctgtgacagctcatatgcgccacatcatcacttaaca-aatttttttaacgtcagagacta 53959117  T
Q  401 aagtgataacggaagt 416  Q
    ||||||||||||||||    
T  53959118 aagtgataacggaagt 53959133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 48573488 - 48573114
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||| |||||||||||||||||||||||  |||| || |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48573488 tatcatttcaatatatcttgagctcttgattattgtatgcttagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 48573389  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| ||||  |||||  ||||||| |||| | ||||||||||||||||||||| | |||||||||||||||| ||| |  ||||||||||||| |||     
T  48573388 agatgctaatatatttgctaattcatcgtcatgcacctaactgatagtaagtatgtacagtcagggacctaacagtaagtt-gttgtgtttaatggaagg 48573290  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  48573289 ttaattttgaataaaagagagaattagatgacatttagggatttgagatttaagaatttaggaatttgatattcaattttggaatattgatttttggttc 48573190  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    | ||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||    
T  48573189 atggatcaaagtgaccattttctactttcactttggtccctgtgacacctcatatgcgcaacatcatcgcttaaca 48573114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 48809280 - 48809649
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||| |||||||||||||||||||||||  |||| ||||  |||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48809280 tatcatttaaatatatcttgagctcttgattattgtatgctcagacctacggg-tagatatatgaattatcatgtgaatataacaataatcaagagtaat 48809378  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |    ||||||||||| ||||    
T  48809379 agatgctaatggatttgctaattcattgtcagggacctaactgatagtaagtatgcacagttagggacctaacaataaat----tgtgtttaatggaaga 48809474  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  48809475 ttaattt-gaacaaaatagagaattagatgacatttagggatttgagatttaagtatttaggaatttgatattcaatttaggaatattgatttttggttc 48809573  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    | ||| | |||||||||||||||||||||||||| |||| | ||||||||  ||||||||||||||||||||||||    
T  48809574 atggatcaaagtgaccattttctactttcactttagtccttctgacacctcatatgcgccacatcatcacttaaca 48809649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 52317413 - 52317146
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||| ||||  |||| ||||  |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||    
T  52317413 tatcatttgaatatatcttgagctcttaattattgtatgctcagacctacgggttagagatatgaattattatgtgaatataacaatactcaagagtaat 52317314  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  |||| |||||||| |||||||||||| ||||||||||| || ||||||||||||    | ||| |||||||||||| ||||    
T  52317313 agatgctaatggatttgctaatttattgtcagagacctaactgattgtaagtatgcacag-cagggacctaac----agtaaattgtgtttaatggaaga 52317219  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatatt 273  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  52317218 ttaattttgaacaaaagagagaattagatgacatttagggatatgaaatttaaggatttaggaatttgatatt 52317146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 127 - 374
Target Start/End: Original strand, 48574207 - 48574451
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||| ||  | |||   |||||||| | |||| ||||||||||||| ||| |||||    
T  48574207 tgtcagagacctaactgatagtaagtatgcacagtcagggacctaacaataggttagt---gtttaatggatgattgattttgaacaaaaaagataatta 48574303  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
    ||||||||||| |||||| ||||||| ||||||||  ||||||||||||||||| | ||||||| |||||||||| ||||  ||||||||||||||||||    
T  48574304 tatgacatttaaggatttaagatttagggatttagagatttgatattcaatttggggatattgaattttggttcaaggactaaagtgaccattttctact 48574403  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaa 374  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  48574404 ttcactttggtccctgtgacacctcatatgcgccacatcatcatttaa 48574451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 129 - 374
Target Start/End: Complemental strand, 36279317 - 36279083
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattata 228  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| ||||| |    
T  36279317 tcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaggt---tggtgtttaatggaagattgattttgaacaaaaaagataattaga 36279221  T
Q  229 tgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctacttt 328  Q
    |||| |||| |||||| ||||||| ||||||        ||||||||||||| | |||||  ||||||||||||||||| ||||||||||||||||||||    
T  36279220 tgacttttaaggatttaagatttagggattt--------gatattcaatttggggatatttttttttggttcagggaccaaagtgaccattttctacttt 36279129  T
Q  329 cactttggtccctgtgacaccttgtatgcgccacatcatcacttaa 374  Q
    ||||||||||||||||||||||  |||| | |||||||||||||||    
T  36279128 cactttggtccctgtgacacctcatatgtgtcacatcatcacttaa 36279083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 127 - 348
Target Start/End: Complemental strand, 55388436 - 55388216
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagaga--at 224  Q
    ||||||||||||||||||||||||||||||| ||||||| || ||||| ||  |   | |||||||||  || ||| ||||||||||||| | |||  ||    
T  55388436 tgtcagggacctaactgatagtaagtatgcacagtcaggaacttaacagtaggt---tggtgtttaatagaatattgattttgaacaaaaaaaagataat 55388340  T
Q  225 tatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttcta 324  Q
    || |||||||||| |||||| ||||||| | ||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  55388339 tagatgacatttaaggatttaagatttaggaatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagtgaccattttcta 55388240  T
Q  325 ctttcactttggtccctgtgacac 348  Q
    ||||||||||||||||||||||||    
T  55388239 ctttcactttggtccctgtgacac 55388216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 127 - 416
Target Start/End: Original strand, 17701676 - 17701952
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttg-aacaaaagagagaatt 225  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||  |   | |||||||||| ||||||||||||  ||||||| ||| ||||    
T  17701676 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaggt---tggtgtttaatggaagattaattttataacaaaaaagataatt 17701772  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
     |||||||| || |||||| ||||||| | |||| || ||||||||||||||||| ||||||||||||||| |||||||||| ||||||               
T  17701773 gtatgacatgtaaggatttaagatttaggaattttgggatttgatattcaatttgggaatattgatttttgcttcagggaccaaagtga----------- 17701861  T
Q  326 tttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    |||||||||||||||||||||||||  ||||||||||||| ||| |||||| |        |||||||| |||||||||||||||||||||    
T  17701862 tttcactttggtccctgtgacacctcatatgcgccacatcgtcatttaacagattttttttaacgtcagggactaaagtgataacggaagt 17701952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 127 - 376
Target Start/End: Original strand, 52318073 - 52318311
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||||||||||||||||||||||||||||| ||| |  ||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| |||||    
T  52318073 tgtcagggacctaactgatagtaagtatgcacagttaaagacctaacaataggt---tggtgtttaatggaagattgattttgaacaaaaaagataatta 52318169  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| |||||| ||||||| ||||||        ||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||||||||    
T  52318170 gatgacatttaaggatttaagatttagggattt--------gatattcaatttggggatattgttttttggttcatggaccaaagtgaccattttctact 52318261  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    |||||||||| || ||||||||||  |||||| | |||||||||||||||    
T  52318262 ttcactttggaccttgtgacacctcatatgcgtctcatcatcacttaaca 52318311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 255 - 369
Target Start/End: Complemental strand, 48808622 - 48808508
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgta 354  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||  ||    
T  48808622 gatttagggatttgatattcaatttgggaatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtctctgtgacacctcata 48808523  T
Q  355 tgcgccacatcatca 369  Q
    |||||||||||||||    
T  48808522 tgcgccacatcatca 48808508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 190 - 376
Target Start/End: Complemental strand, 2591941 - 2591756
Alignment:
Q  190 ttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgata-ttcaattt-gagaatat 287  Q
    |||||| | |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| | |||||||| ||| ||||    
T  2591941 ttaatggatgattgattttgaacaaaagagagaattagatgacatttagagatttgagatttaagaatttaggaatttgagatttcaatttcgag-atat 2591843  T
Q  288 tgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||||| |||||||||| ||||| | ||||| |||||||||||| |||| ||||||||||  |||  |||| ||||||||||||||    
T  2591842 tgatttttgcttcagggaccaaagtggcaattttttactttcactttagtccatgtgacacctcatat--gccatatcatcacttaaca 2591756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 248 - 376
Target Start/End: Complemental strand, 53957930 - 53957802
Alignment:
Q  248 atttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||||||||||| |||||| |||||||||| | |||||||||||||||||| ||||  |||| | ||||||||||||||||||||||||| ||||||    
T  53957930 atttaaggatttagggatttgacattcaatttggggatattgatttttggttcatggactaaagtaatcattttctactttcactttggtccccgtgaca 53957831  T
Q  348 ccttgtatgcgccacatcatcacttaaca 376  Q
    |||  |||| | |||||||||||||||||    
T  53957830 cctcatatgtgtcacatcatcacttaaca 53957802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 345
Target Start/End: Original strand, 36827267 - 36827418
Alignment:
Q  187 tgtttaatgaaagatta-attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaat 285  Q
    ||||||||||||||||  |||||||||||||||||||||||  ||||||||| ||||||||||||        ||||||||||| |||||||||| | ||    
T  36827267 tgtttaatgaaagatttgattttgaacaaaagagagaattagttgacatttaaggatttgagatt--------taggaatttgaaattcaatttggggat 36827358  T
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtga 345  Q
    ||||||||| | |||||||||| || | | ||||||||| ||||||||| ||||||||||    
T  36827359 attgattttcgattcagggaccaaaataatcattttctattttcactttagtccctgtga 36827418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 19115020 - 19115133
Alignment:
Q  235 ttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||||||||||||||||||||| || || |||||||||| ||| | |||||||||||| ||||| ||||  |||||   ||||||||||||||||||    
T  19115020 ttagggatttgagatttaaggatttggggatatgatattcaaattggggatattgatttttagttcatggactaaagtggttattttctactttcacttt 19115119  T
Q  335 ggtccctgtgacac 348  Q
     |||| ||||||||    
T  19115120 agtccatgtgacac 19115133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 47428457 - 47428549
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||| |||||| |||||| ||  ||||||| |||||||||||||||||  |||||||||||| ||||||||||||| |||| ||||||||    
T  47428457 atttagggatttgagattcaagttatgaatattaatttttggttcagggactaaagtgaccatttcctactttcactttagtccatgtgacac 47428549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 33837404 - 33837338
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    |||||| ||||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||    
T  33837404 atttgaaattcaatctggggatattgatttttggttcagggaccaaagtgaccattttctactttca 33837338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 356
Target Start/End: Complemental strand, 20464339 - 20464238
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgta 354  Q
    |||||||| ||||||  ||||| ||| | ||||||||||||| |||| ||||| |||||||||||||||||||||| ||| ||| |||||| |||| |||    
T  20464339 gatttagggatttgaggttcaaattggggatattgatttttgattcatggaccaaagtgaccattttctactttcattttagtctctgtgatacctcgta 20464240  T
Q  355 tg 356  Q
    ||    
T  20464239 tg 20464238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 19114760 - 19114670
Alignment:
Q  257 tttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||| |||||| |||||| ||| || |||||||||||| ||||||||   |||||||||||||||||||||||||| |||| ||||||||    
T  19114760 tttagggatttgagattcaagttggga-tattgatttttgattcagggattaaagtgaccattttctactttcactttagtccttgtgacac 19114670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 45599133 - 45599050
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtcc 339  Q
    ||||||| ||||||  ||||| || ||||||||||||||||||||||| ||  |||||||||||||||||||||| ||| ||||    
T  45599133 atttagggatttgagtttcaagttaagaatattgatttttggttcaggaactaaagtgaccattttctactttcattttagtcc 45599050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 47117945 - 47118037
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||| ||| || |||||| ||| | |||||||||||||||||||||||  ||||||||| |||||| ||||||||| |||| ||||||||    
T  47117945 gatttagggattcgagattcaagttggggatattgatttttggttcagggactaaagtgacca-tttctattttcactttagtccttgtgacac 47118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 45600833 - 45600925
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||| |||||| |||||| ||| | |||||||||||||||||| ||||  || || ||||||| ||||||||||||| || |||||||||    
T  45600833 atttagggatttgaaattcaagttggggatattgatttttggttcaaggactaaactggccattttttactttcactttgatctctgtgacac 45600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 47075245 - 47075337
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||| |||| | |||||| ||| | |||||||||||||||||||||||  ||||||| |||||||||||| ||||| ||  |||||||||    
T  47075245 atttagggatttaagattcaagttggggatattgatttttggttcagggactaaagtgacaattttctactttaactttagtatctgtgacac 47075337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 33427965 - 33427888
Alignment:
Q  271 attcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||| ||| | ||||||||||||||||||||| |  ||||||  |||||||||||||||||| |||| ||||||||    
T  33427965 attcaagttggggatattgatttttggttcaggggctaaagtgataattttctactttcactttagtccatgtgacac 33427888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 34264001 - 34263932
Alignment:
Q  309 aagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacata 378  Q
    |||||||||||||||||||| |||||| | | ||||||| ||| |||||| ||||||||| |||||||||    
T  34264001 aagtgaccattttctacttttactttgattcttgtgacatcttatatgcgtcacatcatcccttaacata 34263932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 40318011 - 40317946
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttc 329  Q
    |||||| ||| |||||  ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  40318011 atttgagatttaattttggaatattgatttttgattcagggaccaaagtgactattttctactttc 40317946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 3693996 - 3694072
Alignment:
Q  258 ttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||| |||||| |||||||||||| | ||| ||||||  |||||||| | ||||||||||||| ||||||||||||    
T  3693996 ttagggatttgagattcaatttgaggagattaattttttattcagggatcaaagtgaccattttgtactttcacttt 3694072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 40206237 - 40206163
Alignment:
Q  186 gtgtttaatgaaagatt-aattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggattt 259  Q
    |||||||||| |||||| |||||||||| ||||||  ||||| |||| |||||| ||||||||||||| ||||||    
T  40206237 gtgtttaatggaagatttaattttgaactaaagaggaaattagatgagatttagagatttgagatttagggattt 40206163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 48808736 - 48808690
Alignment:
Q  128 gtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||    
T  48808736 gtcagggacctaactgatagtaagtatgcacagtcaggaacataaca 48808690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 29188270 - 29188319
Alignment:
Q  281 agaatattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    |||||||||||||| |||||||||| | ||||||| ||||||||||||||    
T  29188270 agaatattgattttcggttcagggatcaaagtgacaattttctactttca 29188319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 612484 - 612389
Alignment:
Q  256 atttaggaattt-gatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||| |||| |||||| |||||  | |||||||||||||||||| ||    || ||| ||||||||||||||||||| ||| |||||||||||    
T  612484 atttagggatttagatatttaattttgggatattgatttttggttcatgggttaaattgatcattttctactttcactttagtctctgtgacacct 612389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 347
Target Start/End: Complemental strand, 40206118 - 40206060
Alignment:
Q  289 gatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    |||||| |||||| ||||| ||||||||||||| |||||||||||| | || |||||||    
T  40206118 gattttcggttcaaggaccaaagtgaccattttatactttcactttagcccttgtgaca 40206060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 33428329 - 33428421
Alignment:
Q  256 atttaggaatttgatattcaa-tttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||| | |||| |||||| ||||||| ||||||||||| ||| ||||||  ||||||||||||| |||||||| ||| |||  ||||||||    
T  33428329 atttagggaattgagattcaagtttgaga-tattgattttttgttgagggactaaagtgaccattttttactttcattttagtctttgtgacac 33428421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 33837485 - 33837534
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaa 253  Q
    |||||||||||||||| |||||| |||| |||||| ||||||||| ||||    
T  33837485 attttgaacaaaagagggaattaaatgagatttagagatttgagaattaa 33837534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 47075355 - 47075384
Alignment:
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  47075355 aacgtcagagactaaagtgataacggaagt 47075384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 47428081 - 47428008
Alignment:
Q  259 taggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcact 332  Q
    |||| |||||| |||||| ||||  ||||||||||||| ||||| |||  ||||||||||||| |||| |||||    
T  47428081 tagggatttgagattcaagttgaacatattgatttttgattcagagactaaagtgaccattttttactctcact 47428008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 49261459 - 49261523
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||||||||| ||||||||   ||||||||||||| ||||| |||||| |||  ||||||||    
T  49261459 atattgatttttgattcagggattaaagtgaccattttatacttccactttagtctttgtgacac 49261523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 35178428 - 35178837
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35178428 tatcatttgaatatatcttgagctcttgattattgtatgctcatacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 35178527  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  ||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||  |||    ||||||||||||| ||||    
T  35178528 agatgctaatggatttgctaattcattgtcagggacctaattgatagtaaatatgcacagtgagggacctaacggtaa----gttgtgtttaatggaaga 35178623  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  35178624 ttaattttgaacaaaagagagaattagatgacatttagggattttagatttaaggatttaagaatttgatattcaatttgggaatattgatttttggttc 35178723  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    |||| || |||||| ||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||| |        |||||||| |||||    
T  35178724 aggggccaaagtgatcattttctagtttcactttggtccctatgacacctcatatgcgccacatcatcacttaacaga--ttttttaacgtcagggacta 35178821  T
Q  401 aagtgataacggaagt 416  Q
    ||||||||||||||||    
T  35178822 aagtgataacggaagt 35178837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 10406691 - 10406335
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||| ||||  ||||  |||  |||| | ||||   |||||||||||||||| ||||||||||||||||||||||||    
T  10406691 tatcatttgaatatatcttgagctctttattattgtatgttcagacctatgtggtatttatatgaattatcatgttaatataacaataatcaagagtaat 10406592  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||    | |||||||||||||||  ||||    
T  10406591 agatgctaatggatttgctaattcattgtcagggacctaactgatagtaagtatgcacagtcagggacctaac----aataagttgtgtttaatagaaga 10406496  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| |||||||||||               |||||||||||||||||||||||||||  ||||||||||||||||||    
T  10406495 ttaattttgaacaaaagagagaattagatgacatttag---------------ggatttaggaatttgatattcaatttggaaatattgatttttggttc 10406411  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    || |||| ||||||| |||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  10406410 agagaccaaagtgactattttctactatcactttggtccctgtgacacctcatatgcgccacatcatcacttaaca 10406335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 127 - 416
Target Start/End: Original strand, 32898193 - 32898478
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| ||  |   | |||||||||| |||||| || |||||||||| ||| |||||    
T  32898193 tgtcagggacctaactgatagtaagtatgcacagtcagagacctaacagtaggt---tggtgtttaatggaagattgatattgaacaaaaaagataatta 32898289  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| |||||| | ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  32898290 gatgacatttaaggatttaaaatttagggatttagggatttgatattcaatttgaggatattgatttttggttcagggaccaaagtgaccattttctact 32898389  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  32898390 ttcactttggtccttgtgacacctcatatgcgccacatcatcacttaacaga-tttttttaacgtcagggactaaagtgataacggaagt 32898478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 131 - 416
Target Start/End: Complemental strand, 35177764 - 35177485
Alignment:
Q  131 agggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  |   | |||||||  ||| |||| ||||||||||||| ||| |||||  ||    
T  35177764 agggacctaactgatagtaagtatgcatagtcagggacctaacaataggt---tggtgtttatagaa-gattgattttgaacaaaaaagataattaggtg 35177669  T
Q  231 acatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    ||||||| |||||| ||||||| | ||||||| ||||||||||||||||| | ||| |||||||||||||||||||| |||| |||||||||||||||||    
T  35177668 acatttaaggatttaagatttaggaatttagggatttgatattcaatttggggatactgatttttggttcagggaccaaagtaaccattttctactttca 35177569  T
Q  331 ctttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  35177568 ctttggtccttgtgaca-catatatgcgccacatcatcacttaacaga-ttattttaacgtcagggactaaagtgataacggaagt 35177485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 187 - 416
Target Start/End: Original strand, 1952783 - 1953003
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaata 286  Q
    ||||||||| |||||| ||||||||||||||||| ||||| |||||||||| |||||| ||||||| ||||||        ||||||||||||| | |||    
T  1952783 tgtttaatggaagattgattttgaacaaaagagataattagatgacatttaaggatttaagatttagggattt--------gatattcaatttgggcata 1952874  T
Q  287 ttgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnn 386  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| |            
T  1952875 ttgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctatgacacctcatatgcgccacatcatcacttaacaga-tttattt 1952973  T
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  1952974 aacgtcagagactaaagtgataacggaagt 1953003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 127 - 376
Target Start/End: Original strand, 10407332 - 10407578
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| ||| |||||||||||||||||| | ||||| ||||||||||  |  |   | |||||||||| |||||| ||||||||||||||||| |||||    
T  10407332 tgtcagtgacttaactgatagtaagtatgaacagtcacggacctaacaacaggt---tggtgtttaatggaagattgattttgaacaaaagagataatta 10407428  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| |||||| || |||| |||||||  | |||||||||||||||| | ||||||||||||||||||| |||  |||| |||||||||||||    
T  10407429 gatgacatttaaggatttaagctttagggatttaacactttgatattcaatttgggcatattgatttttggttcagagactaaagtaaccattttctact 10407528  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||||||||| | ||||||||  |||||| |||||||||||||||||    
T  10407529 ttcactttggtccttatgacacctcatatgcgtcacatcatcacttaaca 10407578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 125 - 348
Target Start/End: Original strand, 28619279 - 28619498
Alignment:
Q  125 attgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaat 224  Q
    |||||||  ||||||| |||||||||||||||| ||| || |||||||     | ||||||||||||||||||||||| ||||| || |||| |||||||    
T  28619279 attgtcattgacctaaatgatagtaagtatgcacagttagagacctaa----tagtaagttgtgtttaatgaaagattgatttttaataaaaaagagaat 28619374  T
Q  225 tatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttcta 324  Q
    || |||||||||||| |||||  ||||| ||||||||| |||||| |||||||||| | |||||||||||||||||| |||   |||||| |||||||||    
T  28619375 tagatgacatttaggaatttgcaatttagggatttagggatttgaaattcaatttggggatattgatttttggttcatggattaaagtgatcattttcta 28619474  T
Q  325 ctttcactttggtccctgtgacac 348  Q
    |||||  ||| |||| ||||||||    
T  28619475 ctttcgatttagtccatgtgacac 28619498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 129 - 334
Target Start/End: Original strand, 5965172 - 5965374
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattata 228  Q
    |||||||||||| |||||||||||||||| ||||| |||| ||||| ||| |   | |||||||||| |||||| ||||||||||||||||| ||||| |    
T  5965172 tcagggacctaattgatagtaagtatgcacagtcatggacttaacactaagt---tggtgtttaatggaagattgattttgaacaaaagagataattaga 5965268  T
Q  229 tgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctacttt 328  Q
    ||||| |||||||||| ||||||| | ||||||  |||||| |||||||||| | ||||||||||||  ||||  |||| || |||| ||||||||||||    
T  5965269 tgacacttagggatttaagatttaggaatttagagatttgaaattcaatttgtggatattgatttttacttcatagaccaaaatgacaattttctacttt 5965368  T
Q  329 cacttt 334  Q
    ||||||    
T  5965369 cacttt 5965374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 127 - 350
Target Start/End: Complemental strand, 5737236 - 5737017
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| || |||| |||||||||||| | | |||||||||||||||| ||| |   | |||||||||| ||||||||||||||| ||||| ||||||||    
T  5737236 tgtcagagatctaattgatagtaagta-gtacagtcagggacctaacaataagt---tggtgtttaatggaagattaattttgaaaaaaagggagaatta 5737141  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaata-ttgatttttggttcagggacccaagtgaccattttctac 325  Q
     ||||||||||||||||| |||||||  |||||| | |||||| |||||||||| | ||| ||||||||||| ||||||||| ||||||  | |||||||    
T  5737140 gatgacatttagggatttcagatttagagatttaaggatttgagattcaatttggggatatttgatttttggatcagggaccaaagtga-taatttctac 5737042  T
Q  326 tttcactttggtccctgtgacacct 350  Q
    ||| ||||| |||| ||||||||||    
T  5737041 ttttactttagtccttgtgacacct 5737017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 30134843 - 30134743
Alignment:
Q  248 atttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||||||||| | |||||| |||||||||| |||||||||||||||||| | ||||| ||||||| |||||||||||||||||| ||| ||||||||    
T  30134843 atttaaggatttaaggatttgaaattcaatttgtgaatattgatttttggttaaaggaccaaagtgacaattttctactttcactttagtctctgtgaca 30134744  T
Q  348 c 348  Q
    |    
T  30134743 c 30134743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 45476405 - 45476337
Alignment:
Q  282 gaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||    
T  45476405 gaatattgatttttggttcagggaccaaagtgacaattttctactttcactttggtctctgtgacacct 45476337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 350
Target Start/End: Original strand, 5737818 - 5737971
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaata 286  Q
    ||||||||| || ||| ||||||||||||||||| ||||| |||||||||||  |||||||||||| ||||||        || |||||||||| | |||    
T  5737818 tgtttaatggaatattgattttgaacaaaagagataattagatgacatttag--atttgagatttagggattt--------gagattcaatttggggata 5737907  T
Q  287 ttgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||| || || |||| ||||||||||||| |||||| ||||| |||| ||||||||||    
T  5737908 ttgatttttgatttagagaccaaagtgaccattttttacttttactttagtccatgtgacacct 5737971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 348
Target Start/End: Original strand, 45476415 - 45476509
Alignment:
Q  254 ggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||||  |||||| ||| |||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||| | ||||||    
T  45476415 ggatttagagatttgagatttaatttgggaatattgatttttggttcagggactaaagtgaccattttctacttttactttggtccatatgacac 45476509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 189 - 348
Target Start/End: Original strand, 32564288 - 32564455
Alignment:
Q  189 tttaatgaaagattaattttgaacaaaagagagaattatatgacatt--------tagggatttgagatttaaggatttaggaatttgatattcaatttg 280  Q
    ||||||| |||| | ||||||||||||||||||||||| |||| |||        ||| ||||||||||||| |||||||||||||||| |||||||  |    
T  32564288 tttaatggaagaatgattttgaacaaaagagagaattagatgaaattgaaggatttagcgatttgagatttagggatttaggaatttgagattcaatacg 32564387  T
Q  281 agaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
     | ||||| |||||||||  ||||||  || ||| ||||||||||| ||||||| |||| ||||||||    
T  32564388 gggatattcatttttggtcaagggactaaaatgatcattttctactatcactttagtccatgtgacac 32564455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 32563892 - 32563828
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatt 250  Q
    |||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  32563892 gtgtttaatagaagattaattttgaacaaaagagagaattagatggcatttagggatttgagatt 32563828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 41122616 - 41122708
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||||| ||||||||||   |||||||||||||||||||||| | ||||||| |||||||| ||||||||| |||  ||||||||    
T  41122616 atttaggaatttgagattcaatttggagatattgatttttggttcagggatcaaagtgacgattttctattttcactttagtcaatgtgacac 41122708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 41121366 - 41121296
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    |||||| |||||||||| | |||||||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  41121366 atttgaaattcaatttggggatattgatttttggttcaaggaccaaagtgacaattttctactttcacttt 41121296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 28526295 - 28526343
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacat 175  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28526295 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacat 28526343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 350
Target Start/End: Original strand, 39138517 - 39138612
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||| |||||| |||||||| | | ||||||||||| ||| || | | | |||||||||||||||||||||||||| |||| ||||||||||    
T  39138517 gatttagggatttgagattcaattcggggatattgattttcggtacaagaatcaaagtgaccattttctactttcactttagtccttgtgacacct 39138612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 41121423 - 41121361
Alignment:
Q  184 ttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttga 246  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||  |||||||    
T  41121423 ttgtgtttaatgaaagattgattttgaacaaaagagagaattagatggcatttaaagatttga 41121361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 41122512 - 41122633
Alignment:
Q  126 ttgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatt 225  Q
    ||||||||||| |  ||||||||||||||||| | ||| || ||||||| ||| |   |||||||||||| |||||| |||||||||||||||   ||||    
T  41122512 ttgtcagggacttgtctgatagtaagtatgcacaatcaagggcctaacaataagt---ttgtgtttaatggaagattgattttgaacaaaagacgaaatt 41122608  T
Q  226 atatgacatttagggatttgagatt 250  Q
    || || |||||||| ||||||||||    
T  41122609 atgtgtcatttaggaatttgagatt 41122633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 2552272 - 2552189
Alignment:
Q  266 ttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||| ||||||| | |||||||||||||| |||||||  ||| ||||||| |||||||||||||||||| || ||||||||||||    
T  2552272 ttgagattcaatctaagaatattgattttcggttcagaaaccaaagtgacaattttctactttcactttagt-cctgtgacacct 2552189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 31074410 - 31074362
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacat 175  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  31074410 tgtcaaggatctaactgatagtaagtatgcatagtcagggacctaacat 31074362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 28006324 - 28006371
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  28006324 tgtcagggacctaactgatagtaagtatgcacaatcagggacctaaca 28006371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 28063627 - 28063674
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  28063627 tgtcagggacctaactgatagtaagtatgcacaatcagggacctaaca 28063674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 41754215 - 41754145
Alignment:
Q  278 ttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||| ||||||||||| | |||||||||| ||||||| ||||| |||||||||||| |||||| ||||||    
T  41754215 ttgaggatattgattttcgattcagggaccaaagtgactattttttactttcactttagtccctatgacac 41754145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 33315085 - 33315033
Alignment:
Q  298 ttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  33315085 ttcacggaccaaagtgactattttctactttcactttggtccatgtgacacct 33315033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 36032933 - 36032881
Alignment:
Q  298 ttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||| || |||| |||||||||||||||||| |||||||||||||||    
T  36032933 ttcagggacctaattgacaattttctactttcactttcgtccctgtgacacct 36032881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 41754688 - 41754752
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||||||| | |||| ||||| ||||||||||||| ||||||||||||  ||||||||||||    
T  41754688 atattgattttcgattcatggaccaaagtgaccattttttactttcactttaatccctgtgacac 41754752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 30134910 - 30134863
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||||    
T  30134910 tgtcagggacctaactgatagtaagtatgcacaatcagagacctaaca 30134863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 31075173 - 31075238
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||  ||||||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  31075173 atattgattttcagttcagggaccaaagtgaccactttctactttca-tttagtccttgtgacacct 31075238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 32563845 - 32563767
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||| |||||| ||||||||||||  |||||||| |||||| | |||   ||||||||||||||||||||| ||||    
T  32563845 atttagggatttgagattcaatttgagggtattgattattggtttaaggattaaagtgaccattttctactttcgcttt 32563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 28006478 - 28006539
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtga 345  Q
    |||||||||||| |||||| |||| ||||||||| |||||| ||||||||| |||| |||||    
T  28006478 atattgatttttagttcagtgaccaaagtgaccactttctattttcactttagtccttgtga 28006539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 28063781 - 28063842
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtga 345  Q
    |||||||||||| |||||| |||| ||||||||| |||||| ||||||||| |||| |||||    
T  28063781 atattgatttttagttcagtgaccaaagtgaccactttctattttcactttagtccttgtga 28063842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 12637647 - 12637707
Alignment:
Q  288 tgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||  ||||||||||| |||||| ||| ||||||||||||||| |||| ||||||||    
T  12637647 tgattttcagttcagggaccaaagtgatcatattctactttcactttagtccatgtgacac 12637707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 13144594 - 13144531
Alignment:
Q  271 attcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||||||  |||||||||||| | || ||||| | ||||||| ||||||||||||||||||    
T  13144594 attcaatttggaaatattgattttcgattaagggatcaaagtgacaattttctactttcacttt 13144531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 31075037 - 31075072
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcag 164  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31075037 tcagggacctaactgatagtaagtatgcataatcag 31075072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1952093 - 1952051
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactca 43  Q
    |||||||||||||||| |||||||||||||||| |||| ||||    
T  1952093 tatcatttgaatatattttgagctcttgattactgtatgctca 1952051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 8569649 - 8569563
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||| |||||||||| | |||||||||||| ||||||||| | || |||  ||||| | |||||| ||| |||| ||||||||||    
T  8569649 atttgagattcaatttgtggatattgatttttagttcagggatcaaaatgataattttttcctttcattttagtccatgtgacacct 8569563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 12637484 - 12637526
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacc 169  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  12637484 tgtcaggaacctaactgatagtaagtatgtatagttagggacc 12637526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 1952733 - 1952770
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcag 164  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  1952733 tgtcagggacctaactgatagtaaatatgcacagtcag 1952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 5965446 - 5965475
Alignment:
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  5965446 aacgtcagagactaaagtgataacggaagt 5965475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 9625438 - 9625381
Alignment:
Q  277 tttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    |||||| ||||||||||| | |||| | ||  ||||||||||||||||||||||||||    
T  9625438 tttgaggatattgattttcgattcacgaactaaagtgaccattttctactttcacttt 9625381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 41754561 - 41754602
Alignment:
Q  131 agggacctaactgatagtaagtatgcatagtcagggacctaa 172  Q
    |||||||||||||| |||||||||  ||||||||||||||||    
T  41754561 agggacctaactgacagtaagtatatatagtcagggacctaa 41754602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 28524999 - 28524935
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||||||| |||||| ||||| || |||| ||||| |||||||||||| |||| | ||||||    
T  28524999 atattgattttcggttcacggaccaaaatgacaattttttactttcactttagtccatctgacac 28524935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 59)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 31091150 - 31091560
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||| |||| ||||||||||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31091150 tatcatttgaatatatattgaactcttgattattgtatgctcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 31091249  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||  |||||| || |||||| |||    ||||||||||||||| ||    
T  31091250 agatgctaatggatttgctaattcattgtcagggacctaactgatagtaagtatgcgcagtcagagatctaacagtaa----gttgtgtttaatgaatga 31091345  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  31091346 ttaattttgaacaaaagagagaattagatgacatttacggatttgagatttaaggatttaggaatttgatattcaatctcggaatattgatttttggttc 31091445  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    |  |||| |||||||||||||||||||||||||||||| |||||||||||  ||||| ||||||||||||||||||||        ||||||||||||||    
T  31091446 aaagaccaaagtgaccattttctactttcactttggtctctgtgacacctcatatgcaccacatcatcacttaacata-tttttttaacgtcagagacta 31091544  T
Q  401 aagtgataacggaagt 416  Q
    ||||||||||||||||    
T  31091545 aagtgataacggaagt 31091560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 39015505 - 39015134
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||| |||| ||||  |||||  || ||||||||||||||||||||||||||||||| |||||||||||||    
T  39015505 tatcatttgaatatatcttgagctcttgattactgtatgctcagacctacatggaagagatatgaattatcatgtgaatataacaacaatcaagagtaat 39015406  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||| ||||||||||||||||||||||  |||||| ||||||| |||||  ||||||||| |||    ||||||||||||| ||||    
T  39015405 agatgataatggatttgttaattcattgtcagggacctaaccaatagtaggtatgcacagtcactgacctaacaataa----gttgtgtttaatggaaga 39015310  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||    
T  39015309 ttaattttaaacaaaagagagaattagatgacatttagggatttgagatttagggattttggaatttgatattcaatttgggaatattgatttttggttc 39015210  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    | ||||| || |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  39015209 aaggaccaaactgaccattttctactttcactttggtccctgtgacacctcatatgcaccacatcatcacttaaca 39015134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 2911111 - 2911481
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||||||||| |||||||||||||||  ||||  |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2911111 tatcatttgaatatatattgagctcttgattattgtatgttcagacctacggggttgagatatgaattatcatgtgaatataacaataatcaagagtaat 2911210  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  ||||||||||||| ||||||||||||| |||||||||| |||||| ||||||||| |||    ||||||||||||| ||||    
T  2911211 agatgctaatggatttgctaattcattgtcagagacctaactgata-taagtatgcacagtcagagacctaacagtaa----gttgtgtttaatggaaga 2911305  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||     
T  2911306 ttaattttgaacaaaagagagaattagatgacatttaggaatttgagatttaaggatttaggaatttgatattcaatttggaaatattgatttttggtta 2911405  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    || |||| ||||||| ||||||||||||||||||||| ||| ||||||||  ||||||||| ||||||||||||||    
T  2911406 agagaccaaagtgacaattttctactttcactttggttcctatgacacctcatatgcgccatatcatcacttaaca 2911481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 24459077 - 24459422
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  |||| ||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24459077 tatcatttgaatatatcttgagctcttgattattgtatgctcagacttacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 24459176  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||| | |  ||||| ||  ||||||||||||| |||||||||||||||||||||||  ||| |||||||||||| |||    ||||||||||||||||||    
T  24459177 agaagctggtggatatgctaattcattgtcagagacctaactgatagtaagtatgcgcagttagggacctaacagtaa----gttgtgtttaatgaaaga 24459272  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  24459273 ttaattttgaacaaaagagataattagacgacatttagggatttcagatttaaggatttacgaatttgatattcaatttgggaatattgatttttggttc 24459372  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  24459373 agggatcaaagtgaccattttctactttcactttggtccctatgacacct 24459422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 39999957 - 40000328
Alignment:
Q  1 tatcatttgaa-tatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaa 99  Q
    ||||||||||| |||||||||| | ||||||||  |||| ||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39999957 tatcatttgaaatatatcttgaacacttgattatagtatgctcagatctacggggtagatatatgaattatcatgtgaatataacaataatcaagagtaa 40000056  T
Q  100 tagatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaag 199  Q
    |||||  |||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||| | || |||    |||||||||||||||||    
T  40000057 tagatactaatggattttttaattcattgtcagggacctaactcatagtaagtatacatagtcagggaccgatcagtaa----gttgtgtttaatgaaag 40000152  T
Q  200 attaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggtt 299  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  40000153 attaattttgaacaaaagagagaattagatgacacttatggatttgagatttaaggatttagaaatttgatattcaatttgggaatattgatttttggtt 40000252  T
Q  300 cagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    || ||||| |||||| |||||||||||||||||||||||||| ||||||||  ||||| ||| ||||||||||||||    
T  40000253 caaggaccaaagtgatcattttctactttcactttggtccctctgacacctcatatgcacca-atcatcacttaaca 40000328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 32765904 - 32766164
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||| |||||||||||||||||||||||  |||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32765904 tatcatttaaatatatcttgagctcttgattattgtatactcagacctgcggg-tagagatatgaattatcatgtgaatataacaataatcaagagtaat 32766002  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    | |||||||||||||||| ||||    
T  32766003 agatgctaatcgatttgctaattcattgtcagggacctaactgatagtaagtatgcacagtcagagacctaac----aataagttgtgtttaatggaaga 32766098  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatt 266  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  32766099 ttaattttgaacaaaagagaaaattaaatgacatttagggatttgagatttaaggatttaggaatt 32766164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 127 - 416
Target Start/End: Complemental strand, 32765312 - 32765028
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaatt 225  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||     |||| ||||||||| |||||| ||||||||||||| ||| ||||    
T  32765312 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtag----gttgctgtttaatggaagattgattttgaacaaaaaagataatt 32765217  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
    | |||||||||| |||||| | ||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||    
T  32765216 agatgacatttaaggatttaaaatttagggatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagcgaccattttctac 32765117  T
Q  326 tttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||| |||||| ||||||||  ||||||||||||||||||||||||||        |||||||| || ||||||||||||||||||    
T  32765116 tttcactttagtccctatgacacctcatatgcgccacatcatcacttaacata--ttttttaacgtcagggattaaagtgataacggaagt 32765028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 131 - 374
Target Start/End: Complemental strand, 24458431 - 24458191
Alignment:
Q  131 agggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatg 230  Q
    ||||||||||||||||||||||||||| ||| || ||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| ||||| |||    
T  24458431 agggacctaactgatagtaagtatgcacagtaagagacctaacagtaggt---tggtgtttaatggaagattgattttgaacaaaaaagataattagatg 24458335  T
Q  231 acatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    ||||||| |||||| | ||||| ||||||||| || |||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||    
T  24458334 acatttaaggatttaaaatttagggatttagggatctgatattcaatttgaggatattgatttttgattgagggaccaaagtgaccattttctactttca 24458235  T
Q  331 ctttggtccctgtgacaccttgtatgcgccacatcatcacttaa 374  Q
    ||||||||||||||||||||  |||||||||||| |||||||||    
T  24458234 ctttggtccctgtgacacctcatatgcgccacattatcacttaa 24458191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 127 - 376
Target Start/End: Complemental strand, 2910475 - 2910229
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| ||  |   | |||||||||| |||||| ||||||||||||  ||| || ||    
T  2910475 tgtcagggacctaactgatattaagtatgcacagtcagggacctaacagtaggt---tggtgtttaatgtaagattgattttgaacaaacaagataacta 2910379  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| |||||||| ||||| ||||||||| ||| ||||||||||||| | |||||||||||||||||| ||||| |||||| ||||||| |||    
T  2910378 gatgacatttaaggatttgaaatttacggatttagggattcgatattcaatttggggatattgatttttggttcatggaccaaagtgatcattttcgact 2910279  T
Q  327 ttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    |||| |||||||| ||||| ||||  ||||||||||||||||||||||||    
T  2910278 ttcattttggtccttgtgatacctcatatgcgccacatcatcacttaaca 2910229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 135 - 416
Target Start/End: Complemental strand, 14704363 - 14704096
Alignment:
Q  135 acctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacat 234  Q
    ||||||||||||||||||||||| ||| ||||| |||||| ||  |   | |||||||||| |||||| ||||||||||||| | | ||||| |||||||    
T  14704363 acctaactgatagtaagtatgcacagt-agggaactaacaataggt---tggtgtttaatggaagattgattttgaacaaaaaatataattagatgacat 14704268  T
Q  235 ttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||| |||||| ||||||| ||||||        ||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  14704267 ttaaggatttaagatttagggattt--------gatattcaatttggggatattgatttttggttcatggaccaaagtgactattttctactttcacttt 14704176  T
Q  335 ggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||  ||||||||||||||||||||||||||        |||||||| |||||||||||||||||||||    
T  14704175 ggtccctgtgacacctcatatgcgccacatcatcacttaacata--ttttttaacgtcagggactaaagtgataacggaagt 14704096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 127 - 345
Target Start/End: Complemental strand, 31090532 - 31090317
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||| | ||  |   | |||||||||| |||||| |||||||||||||| || |||||    
T  31090532 tgtcagggacctaaatgatagtaagtatgcacagtcaggaacctaatagtaggt---tggtgtttaatggaagattgattttgaacaaaagggataatta 31090436  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     |||||||||| |||||| |  |||| ||||||| | ||||||||||||||||| | ||||| |||||||||||||||||| ||| | ||||||||||||    
T  31090435 gatgacatttatggatttaaattttagggatttaaggatttgatattcaatttggggatattaatttttggttcagggaccaaagcggccattttctact 31090336  T
Q  327 ttcactttggtccctgtga 345  Q
    |||||||||||||||||||    
T  31090335 ttcactttggtccctgtga 31090317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 127 - 416
Target Start/End: Original strand, 39016142 - 39016416
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaatt 225  Q
    |||||| ||||||||||||||||| |||||| |||||||||| ||||      || |||| ||||||||| ||||||  |||||||||||| ||| ||||    
T  39016142 tgtcagagacctaactgatagtaaatatgcacagtcagggacttaac------taggttggtgtttaatggaagattg-ttttgaacaaaatagataatt 39016234  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
    | |||||||||| |||||| ||||||| ||||||         |||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||    
T  39016235 agatgacatttaaggatttaagatttagggatttc--------atattcaatttgggcatattgatttttggttcagggaccaaagtgacaattttctac 39016326  T
Q  326 tttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    |||||||||||||| ||||||||||  ||||||  | ||||||||||||||||        ||||||||||||||||||||||||||||||    
T  39016327 tttcactttggtccatgtgacacctcatatgcgtaatatcatcacttaacata-tttttttaacgtcagagactaaagtgataacggaagt 39016416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 205 - 350
Target Start/End: Original strand, 17330042 - 17330187
Alignment:
Q  205 ttttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcaggg 304  Q
    ||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||   |||||| |||||||||  | ||||||||||| |||||||||    
T  17330042 ttttgaacaaaagagagaattatatgacattcaggggtttgaaatttagggatttaatgatttgagattcaatttagggatattgattttgggttcaggg 17330141  T
Q  305 acccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||| ||||||||||||| |||||||||||| ||| |||||||||||    
T  17330142 accaaagtgaccattttttactttcactttagtctctgtgacacct 17330187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 187 - 350
Target Start/End: Complemental strand, 7073969 - 7073805
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaata 286  Q
    ||||||||| | |||| ||||||||| ||||||||||||| |||| ||||||||||||||||| ||  |||||| | |||||| |||||||||  |||||    
T  7073969 tgtttaatggatgattgattttgaacgaaagagagaattagatgatatttagggatttgagatatagtgatttaaggatttgagattcaatttaggaata 7073870  T
Q  287 ttg-atttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||| |||||||||||||||||| |||||| |||||| || |||| |||| |||||||||||||||    
T  7073869 ttgaatttttggttcagggaccaaagtgatcattttttattttcgctttagtccctgtgacacct 7073805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 43380836 - 43380742
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||||| |||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||    
T  43380836 atttaggaatttgaaattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctactttcactttagttcatgtgacacct 43380742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 14705021 - 14705097
Alignment:
Q  24 tcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    |||||||||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14705021 tcttgattattgtatgctcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 14705097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 21732362 - 21732274
Alignment:
Q  258 ttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgac 346  Q
    ||||| |||||| |||||||||| | ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  21732362 ttagggatttgagattcaatttggggatattaatttttggttcagggaccaaagtgaccattttctactttcactttagtcccggtgac 21732274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 32766168 - 32766272
Alignment:
Q  312 tgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacg 411  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| |        |||||||  ||||||||||||||||    
T  32766168 tgaccattttctactttcactttggtctctgtgacacctcatatgcgccacatcatcacttaacagattttttttaacgtcaaggactaaagtgataacg 32766267  T
Q  412 gaagt 416  Q
    |||||    
T  32766268 gaagt 32766272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 5914858 - 5914978
Alignment:
Q  228 atgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactt 327  Q
    |||||||||||| |||||||||||| ||||||||  |||| | ||||||  || | |||||||||||||||||||||||  ||||||| ||||| |||||    
T  5914858 atgacatttaggaatttgagatttagggatttagagattttagattcaagctggggatattgatttttggttcagggactaaagtgacaattttttactt 5914957  T
Q  328 tcactttggtccctgtgacac 348  Q
    ||| ||| ||| |||||||||    
T  5914958 tcattttagtctctgtgacac 5914978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 31443084 - 31443193
Alignment:
Q  241 atttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccc 340  Q
    ||||| ||| || |||||||||||||||| ||| ||||||   ||||||||||| |||||||| ||| || |||| |||||||||||||||||| ||| |    
T  31443084 atttgggatatagggatttaggaatttgagatttaatttggagatattgattttcggttcaggaaccaaaatgacaattttctactttcactttagtcac 31443183  T
Q  341 tgtgacacct 350  Q
    ||||||||||    
T  31443184 tgtgacacct 31443193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 21733627 - 21733703
Alignment:
Q  258 ttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||| |||||| |||||||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||    
T  21733627 ttagggatttgagattcaatttgggaatattgattttcggttcagagaccaaagtgaccattttttactttcacttt 21733703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 7412363 - 7412269
Alignment:
Q  254 ggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||||| |||||| |||||||||  | |||||| ||||||||| ||||| | |||||||||||||||| ||||||||| |||| ||||||||    
T  7412363 ggatttagggatttgagattcaatttagggatattgttttttggttgagggaacaaagtgaccattttctattttcactttagtccttgtgacac 7412269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 378
Target Start/End: Complemental strand, 39999197 - 39999079
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgta 354  Q
    |||||||| ||||||||||||||| ||   ||||||||||| ||||||||| | ||||||| |||||||||||||||| || ||||| ||| ||||   |    
T  39999197 gatttagggatttgatattcaattgga---tattgattttttgttcagggatcaaagtgacaattttctactttcactctgatccctatgatacct--ca 39999103  T
Q  355 tgcgccacatcatcacttaacata 378  Q
    || | |||||||||||||||||||    
T  39999102 tgtgtcacatcatcacttaacata 39999079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 14887373 - 14887446
Alignment:
Q  277 tttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||| ||||||||||||  ||||||||||  | ||||||||||||||||||||||| |||||||||||||||    
T  14887373 tttgaggatattgatttttaattcagggaccatattgaccattttctactttcactttagtccctgtgacacct 14887446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 33163320 - 33163413
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgc 357  Q
    |||||| |||||||||| | |||||||||||||||||||||||| ||   ||  ||||||||||| |||||||| ||||||||||||| |||||    
T  33163320 atttgaaattcaatttggggatattgatttttggttcagggaccaaaacaacatttttctactttgactttggtgcctgtgacaccttatatgc 33163413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 12010300 - 12010224
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccc 340  Q
    ||||||||||||||||| | ||||||||||||||||||   ||| || ||||||||||||||||||||||| |||||    
T  12010300 atttgatattcaatttggggatattgatttttggttcatataccaaaatgaccattttctactttcactttagtccc 12010224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 38984742 - 38984857
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaa-gattaattttgaacaaaagagagaattat 227  Q
    |||| ||||||||||||| |||||||||| | |||  || |||||| ||| |   | ||||||||||||| |||| |||||||||||||||||||||||     
T  38984742 tcagagacctaactgataataagtatgcacaatcaaagatctaacaataagt---tggtgtttaatgaaaagatttattttgaacaaaagagagaattag 38984838  T
Q  228 atgacatttagggatttga 246  Q
    |||||||||| ||||||||    
T  38984839 atgacatttacggatttga 38984857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 331
Target Start/End: Original strand, 39256762 - 39256950
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||||||||||||| |||||||||||||| | |||| ||||||||| ||| |  |||   ||||||| |||||| | |||||||||||||||||||||    
T  39256762 tgtcagggacctaactaatagtaagtatgcacaatcagcgacctaacagtaagttggtt---tttaatggaagattgactttgaacaaaagagagaatta 39256858  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcag--ggacccaagtgaccattttcta 324  Q
     ||| ||| ||               |||||||||| |||||| |||||||| | ||||||| |||||||||||||  | ||| ||||||||||||||||    
T  39256859 gatgtcatata---------------aggatttagggatttgagattcaattggggaatattaatttttggttcaggagaaccaaagtgaccattttcta 39256943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 18675501 - 18675451
Alignment:
Q  125 attgtcagggacctaactgatagtaagtatgcatagtcagggacctaacat 175  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  18675501 attgtcagggacctaactgatagtaagtatgcacagtcaggaacctaacat 18675451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 34037544 - 34037621
Alignment:
Q  273 tcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||| |||||||||||||||||||| | | ||||||| |||||||||| ||||||| |||  ||||||||||    
T  34037544 tcaatttgaggatattgatttttggttcaggaatcaaagtgactattttctactgtcactttagtctgtgtgacacct 34037621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 18676705 - 18676768
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||| || |||||    
T  18676705 atattgattttttgttcagggaccaaagtgaccattttctactttcgctttagtctctttgaca 18676768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 37607343 - 37607280
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||||||||||||||| |||| ||||||| ||||||||| |||||||| |||| |||||||    
T  37607343 atattgatttttggttcagagaccaaagtgactattttctacgttcactttagtccttgtgaca 37607280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 8420747 - 8420842
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttga-gatttaa----ggatttaggaatttgatattcaatttgagaatattgatttt 294  Q
    |||||||||||||||| |||||| |||| |||||||||||| | |||| ||    |||||||||||||||| |||||||||  |||||||||||||    
T  8420747 attttgaacaaaagagggaattagatgaaatttagggattttatgattaaattcgggatttaggaatttgagattcaatttcggaatattgatttt 8420842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 26585316 - 26585251
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||| ||||| |||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||    
T  26585316 atatttattttcggttcagggaccaaagtgacca-tttctattttcactttagtccctgtgacacct 26585251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 33439504 - 33439407
Alignment:
Q  241 atttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtcc 339  Q
    ||||| |||||| |||| |||| |||||| |||||||||| |||||||||||||  ||||||| | | ||| |||||||||||||||| ||||| ||||    
T  33439504 atttgggatttagggatgtagggatttgacattcaatttg-gaatattgattttcagttcaggaatctaagagaccattttctactttaactttagtcc 33439407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 34582379 - 34582421
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggaccta 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  34582379 tcagggacctaactgatagtaagtatgcatagtcatggaccta 34582421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 43381045 - 43381139
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||| |||||| |||||||||  | |||||||||||  ||||||||||| || |||| |||||||| ||| ||||| |||| ||||||||||    
T  43381045 atttagggatttgagattcaatttagggatattgattttgtgttcagggaccaaaatgactattttctatttttactttagtccttgtgacacct 43381139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 33162073 - 33162020
Alignment:
Q  197 aagattaattttgaacaaaagagagaattatatgacatttagggatttgagatt 250  Q
    |||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  33162073 aagattgattttgaacaaaagagataattagatgacatttaaggatttgagatt 33162020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 347
Target Start/End: Complemental strand, 12003845 - 12003745
Alignment:
Q  247 gatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgac 346  Q
    |||||| | ||||||  ||||||||||||||||| | |||||| |||| |||| || |||| || | || |||||||| ||||||||| |||||||||||    
T  12003845 gatttaggaatttagagatttgatattcaatttggggatattggttttcggttgagagaccaaaattactattttctattttcactttagtccctgtgac 12003746  T
Q  347 a 347  Q
    |    
T  12003745 a 12003745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 33163258 - 33163310
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagg 239  Q
    ||||||||| |||||| |||||||||| |||||| ||||||||||||||||||    
T  33163258 tgtttaatggaagattgattttgaacacaagagataattatatgacatttagg 33163310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 38855949 - 38855996
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  38855949 tgtcagggaactaactgatagtaagtatgcactgtcagggacctaaca 38855996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 33162029 - 33161943
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||| |||| ||||| | |||| ||||||||||||||||||  ||||||  |||||||||||||| ||| |||  ||||||||||    
T  33162029 atttgagattcgatttggggatatcgatttttggttcagggactaaagtgatgattttctactttcattttagtctttgtgacacct 33161943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 7412568 - 7412617
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaa 253  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||||||    
T  7412568 attttgaacaaaagagataattatatgacatttataaatttgagatttaa 7412617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 11985930 - 11985861
Alignment:
Q  265 tttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||| ||||||||||  |||||| ||||| |||||||||| | |||||||  |||||||||||||||||    
T  11985930 tttgagattcaatttggaaatattaattttcggttcagggatcaaagtgacttttttctactttcacttt 11985861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 38854249 - 38854298
Alignment:
Q  125 attgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||||||||||||| ||||||||||||||||| |||||  |||||||||    
T  38854249 attgtcagggacctagctgatagtaagtatgcacagtcaaagacctaaca 38854298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 12396226 - 12396162
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||||||| || |||  ||||||| |||||||||||||| ||| |||| ||||||||    
T  12396226 atattgatttttggtttagtgactaaagtgactattttctactttcattttagtccatgtgacac 12396162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 31442602 - 31442506
Alignment:
Q  254 ggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||| |||| |||||| |||||||||  | ||||||||||| |||||||||||| | |||  ||||||  ||||||||||| |||| | ||||||||    
T  31442602 ggatatagggatttgagattcaatttagggatattgattttcggttcagggaccaatgtgttcatttttgactttcactttagtccttatgacacct 31442506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 43380883 - 43380823
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttga 246  Q
    |||||||||| || ||| ||||||||||||| |||||||| || |||||||||| ||||||    
T  43380883 gtgtttaatggaatattgattttgaacaaaatagagaattgtacgacatttaggaatttga 43380823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 12004762 - 12004841
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatt 266  Q
    ||||||||| ||  || ||||||||||||||||| ||||| |||| ||||| | |||||| ||||| ||||| |||||||    
T  12004762 tgtttaatgtaaatttgattttgaacaaaagagataattagatgagatttatgaatttgatatttagggattaaggaatt 12004841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 12746082 - 12746149
Alignment:
Q  284 atattgatttttggttc-agggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||| | || ||||| | || ||| ||||||||||||||||||| |||||||||||||||    
T  12746082 atattgatttttcggtctagggatcaaaatgatcattttctactttcactttagtccctgtgacacct 12746149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 349
Target Start/End: Original strand, 12011277 - 12011438
Alignment:
Q  186 gtgtttaatgaaagatta-attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaa 284  Q
    |||||||||| ||||||  |||||||| ||| |||||||||| || | |||||||||||  |   ||| || |||||| ||| || ||| ||| |  | |    
T  12011277 gtgtttaatgtaagatttgattttgaataaatgagagaattagataagatttagggattaaa---ttatgggtttagggattggagatttaatctaggga 12011373  T
Q  285 tattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacc 349  Q
    |||||||||||| ||||| |||| || ||||||||||||| ||||||| | ||||  ||||||||    
T  12011374 tattgatttttgattcagtgaccaaaatgaccattttctattttcactctcgtccaagtgacacc 12011438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 17466683 - 17466776
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||| |||||| ||| |||||  | ||||| |||||||||| ||||| | || |||||||||| |||||||||||| || | ||||||||||    
T  17466683 atttagggatttgaaatttaatttagggatattaatttttggtt-agggatcaaattgaccattttttactttcactttagtgcgtgtgacacct 17466776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 31442672 - 31442614
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttagg 262  Q
    ||||| ||||||||||  ||||| |||| |||||||||||||||||||| | |||||||    
T  31442672 attttaaacaaaagaggaaattagatgagatttagggatttgagatttaggaatttagg 31442614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 15440900 - 15440864
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtca 163  Q
    |||||||||||||||||||| |||||||||| |||||    
T  15440900 tgtcagggacctaactgataataagtatgcacagtca 15440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 28864663 - 28864759
Alignment:
Q  254 ggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||| |||||| |||||| ||| |||||||||||||   ||| || ||  || ||| ||||||||| ||||||||| |||| | ||||||||    
T  28864663 ggatttagggatttgaaattcaacttgggaatattgattttcaattctggaactaaaatgatcattttctattttcactttagtccatatgacacct 28864759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 36012725 - 36012769
Alignment:
Q  304 gacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||| |||||||||||||||||||||| ||| |||||| ||||||    
T  36012725 gaccaaagtgaccattttctactttcattttagtccctctgacac 36012769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 38853994 - 38853930
Alignment:
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||| |||||| ||||| | | ||| ||| |||||||||| ||| |||||||||||||||    
T  38853994 attgattttcggttcaaggaccaaggcgactattatctactttcaatttagtccctgtgacacct 38853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 38854166 - 38854122
Alignment:
Q  131 agggacctaactgatagtaagtatgcatagtcagggacctaacat 175  Q
    |||||||||||| |||||||||||||| ||||| | |||||||||    
T  38854166 agggacctaactaatagtaagtatgcaaagtcacgaacctaacat 38854122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 38855028 - 38854964
Alignment:
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||| |||||| ||||| | ||||| ||| |||||||||| ||| | |||||||||||||    
T  38855028 attgattttcggttcaaggaccaaggtgactattatctactttcaatttagcccctgtgacacct 38854964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 376
Target Start/End: Original strand, 52440185 - 52440554
Alignment:
Q  3 tcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaatag 102  Q
    |||||||||||||||||||||| ||| |||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52440185 tcatttgaatatatcttgagctattggttattgtatgctcagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaatag 52440284  T
Q  103 atgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagatt 202  Q
    | | |||||||||||  |||||||||||| ||||||||||||||||||||||||  |||  ||||||||||| |||    ||||||||||||||||||||    
T  52440285 aagctaatggatttgctaattcattgtcaaggacctaactgatagtaagtatgcgcagttggggacctaacactaa----gttgtgtttaatgaaagatt 52440380  T
Q  203 aattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcag 302  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  52440381 aattttaaacaaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatacttatttttggttcag 52440480  T
Q  303 ggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||||   |||| | ||||||||||||||||    
T  52440481 ggaccaaagtgactattttctactttcactttggcccctgtgacacctcagatgcactacatcatcacttaaca 52440554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 9340663 - 9341058
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  ||||  | |  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9340663 tatcatttgaatatatcttgagctcttgattattgtatgtttagacctacggggtagagatatgaattatcatgtgaatataagaataatcaagagtaat 9340762  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||    | |||||||||||||||| ||||    
T  9340763 agatgctaatggatttgctaattcattgtcagggacctaactgatagtaagtatgcacagtcagggacctaac----agtaagttgtgtttaatggaaga 9340858  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||||||||||||| ||||| |||||||||||               |||||||||||||||||||||| |||| ||||||||| |||||||||    
T  9340859 ttaattttgaacaaaagagaaaattagatgacatttag---------------ggatttaggaatttgatattcattttgggaatattgaattttggttc 9340943  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| | |        ||||||||||||||    
T  9340944 agggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgcgccacatcatcacttaataga-tttttttaacgtcagagacta 9341042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 62 - 376
Target Start/End: Complemental strand, 32664941 - 32664632
Alignment:
Q  62 atgaattatcatgtgaatataacaataatcaagagtaatagatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||| | |    
T  32664941 atgaattatcatgtgaatataacaataatcaagagtaatagatgctaatggatttcctaattcattgtcagggacctaactgatagtaagtatgcacaat 32664842  T
Q  162 cagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttag 261  Q
    ||||||||||||| |||    |  ||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  32664841 cagggacctaacagtaa----gccgtgtttaatgaaagattaattttaaacaaaagagagaattaaatcagatttagggatttgagatttaaggatttag 32664746  T
Q  262 gaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgcca 361  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||| ||||||| |||||||||||||| |||||||||| ||||||||  |||||||||    
T  32664745 gaatttgatattcaatttgggaatattgatttttgattca-agaccaaagtgactattttctactttcattttggtccctttgacacctcatatgcgcca 32664647  T
Q  362 catcatcacttaaca 376  Q
    |||||||||||||||    
T  32664646 catcatcacttaaca 32664632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 7945197 - 7945587
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||| ||||||||||||||||||||  |||| ||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7945197 tatcatttgaaaatatcttgagctcttgattattgtatgctcagacttacggggtaaagatatgaattatcatgtgaatataacaataatcaagagtaat 7945296  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    ||||| ||||||||||   |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    | |||||||||||||||| ||||    
T  7945297 agatgctaatggatttcctaattcattgtcagggacctaactgatagtaagtatgcacagtcagagacctaac----aataagttgtgtttaatggaaga 7945392  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||| ||||||||||||||||||     
T  7945393 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaag--------------------aatttgggaatattgatttttggttt 7945472  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacatannnnnnnnaacgtcagagacta 400  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||||||||  |||| |||||||||||||||| ||||        |||||||| |||||    
T  7945473 agggaccaaagtgaccattttctactttcactttgatccttgtgacacctcatatgtgccacatcatcacttagcata-tttttttaacgtcagggacta 7945571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 128 - 348
Target Start/End: Complemental strand, 52439835 - 52439618
Alignment:
Q  128 gtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattat 227  Q
    |||||||  |||| |||||||||||||||  |||||||||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| |||||     
T  52439835 gtcaggggtctaattgatagtaagtatgcgcagtcagggacctaacagtaggt---tggtgtttaatggaagattgattttgaacaaaaaagataattag 52439739  T
Q  228 atgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactt 327  Q
    |||||||||| |||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||    
T  52439738 atgacatttaaggatttaaaatttagggatttaggaatttgatattcaatttgaggatattgatttttggtttagggatcaaagtgaccattttctactt 52439639  T
Q  328 tcactttggtccctgtgacac 348  Q
    |||||||||||| ||||||||    
T  52439638 tcactttggtccttgtgacac 52439618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 127 - 376
Target Start/End: Original strand, 32665525 - 32665764
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||||||||||||||||||||||| ||   |||||||||||||||| ||  |   | ||||| |||  |||||| ||||||||||||| ||| |||||    
T  32665525 tgtcagggacctaactgatagtaagtgtgtgcagtcagggacctaacagtaggt---tggtgttgaatagaagattgattttgaacaaaaaagataatta 32665621  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttg-gttcagggacccaagtgaccattttctac 325  Q
     |||||||||| |||||| ||||||| ||||||        ||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||    
T  32665622 gatgacatttaaggatttaagatttagggattt--------gatattcaatttggggatattgatttttgtgttcagggaccaaagtgaccattttctac 32665713  T
Q  326 tttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  32665714 tttcactttggtccttgtgacacctcatatgcgccacatcatcacttaaca 32665764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 129 - 350
Target Start/End: Complemental strand, 6612803 - 6612585
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattata 228  Q
    ||||||||||||||||||||||||||||| ||| |  || | |||| ||| |   | |||||||||| |||||| ||||| ||||||| ||||||||| |    
T  6612803 tcagggacctaactgatagtaagtatgcacagttaaagatcaaacagtaagt---tggtgtttaatggaagattgattttaaacaaaaaagagaattaga 6612707  T
Q  229 tgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctacttt 328  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||||| | |||||||||||||||||| ||||  |||||| |||||||||||||    
T  6612706 tgacatttagggatttgagatttaggaatttagggatttgagattcaatttggggatattgatttttggttcaaggacaaaagtgatcattttctacttt 6612607  T
Q  329 cactttggtccctgtgacacct 350  Q
     | ||| |||||||||||||||    
T  6612606 gaatttagtccctgtgacacct 6612585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 255 - 416
Target Start/End: Complemental strand, 9339896 - 9339736
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgta 354  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||  ||    
T  9339896 gatttagggatttgatattcaatttggggatattgatttttggttcagagaccaaagtgaccattttctactttcactttggtccctgtgacatctcata 9339797  T
Q  355 tgcgccacatcatcacttaacatannnnnnnnaacgtcagagactaaagtgataacggaagt 416  Q
    |||||||||||||||||||||| |        |||||||| |||||||||||||||||||||    
T  9339796 tgcgccacatcatcacttaacaga-tttttttaacgtcagggactaaagtgataacggaagt 9339736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 127 - 378
Target Start/End: Complemental strand, 7944534 - 7944282
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacat--taat--taagttg-tgtttaatgaaagattaattttgaacaaaagagag 221  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||| |   |||   || |||| ||||||||| |||||| |||||||| |||| |||     
T  7944534 tgtcagggacctaactgatagtaagtatgcacattcagagacctaaaaaactaacaataggttggtgtttaatggaagattgattttgaataaaaaagat 7944435  T
Q  222 aattatatgacatttagggatttgag-atttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattt 320  Q
    ||||| |||||||    | |||| || ||||||| ||||||| ||||||||||||||||| | ||||||||||||||| |||||||| ||||||  ||||    
T  7944434 aattagatgacat----gcatttaaggatttaag-atttagggatttgatattcaatttggggatattgatttttggtccagggaccaaagtgataattt 7944340  T
Q  321 tctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacata 378  Q
    ||||||||||||||||||  ||||||||||  ||||||||| || |||||||||||||    
T  7944339 tctactttcactttggtctatgtgacacctcatatgcgccatattatcacttaacata 7944282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 131 - 350
Target Start/End: Complemental strand, 51450391 - 51450175
Alignment:
Q  131 agggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatg 230  Q
    ||||||||||||||||||||||||||| | | || ||||||| | ||| |   | |||||||||| |||||| ||||||||||||||||| ||||| |||    
T  51450391 agggacctaactgatagtaagtatgcacactaagagacctaatagtaagt---tggtgtttaatggaagattgattttgaacaaaagagataattagatg 51450295  T
Q  231 acatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    ||| ||| ||||||||||||||   |||| |  |||||| |||||| ||| | ||||| |||||||||||| ||||   ||||| |||||||||||||||    
T  51450294 acacttacggatttgagatttagaaattttgagatttgagattcaagttggggatatttatttttggttcatggactatagtgatcattttctactttca 51450195  T
Q  331 ctttggtccctgtgacacct 350  Q
     ||| |||||||||||||||    
T  51450194 gtttagtccctgtgacacct 51450175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 348
Target Start/End: Original strand, 34088213 - 34088415
Alignment:
Q  133 ggacctaactgatagtaagtatgcatagtcagggacctaacattaa-ttaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatga 231  Q
    ||||||||||||||||||||||||| ||||||  | |||||| ||| ||||    |||||| || |||||||||||||||||||||||||||||| || |    
T  34088213 ggacctaactgatagtaagtatgcacagtcag--atctaacagtaagttaa----tgtttagtggaagattaattttgaacaaaagagagaattagataa 34088306  T
Q  232 catttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcac 331  Q
    ||||||  ||||||||||||| ||||||        || |||||||||| | ||||||| |||| ||||||||||| |||||||   |||||||||||||    
T  34088307 catttaatgatttgagatttagggattt--------gaaattcaatttggggatattgaatttttgttcagggaccaaagtgacacatttctactttcac 34088398  T
Q  332 tttggtccctgtgacac 348  Q
    ||| |||||| ||||||    
T  34088399 tttagtccctatgacac 34088415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 350
Target Start/End: Original strand, 22857373 - 22857527
Alignment:
Q  197 aagattaattttgaacaaaagagagaattatatgacatttagggatttgaga-tttaaggatttaggaatttgatattcaatttgagaatattgattttt 295  Q
    |||||| |||||||||||||  || ||||| |||| |||||||||||||||| |||| ||||||| | |||||| |||||||||| | ||||||||||||    
T  22857373 aagattgattttgaacaaaaaggaaaattagatgatatttagggatttgagattttagggatttaaggatttgagattcaatttgggtatattgattttt 22857472  T
Q  296 ggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||    | ||||||| | |||||||||||||||| |||| ||||||||||    
T  22857473 ggttcagttttcaaagtgactagtttctactttcactttagtccatgtgacacct 22857527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 345
Target Start/End: Original strand, 6613736 - 6613930
Alignment:
Q  133 ggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaattatatga 231  Q
    |||||||||||||| |||||||||||| |||||||| ||| | |||    |||| ||||||||  || ||| |||||| |||||||||||||||||||||    
T  6613736 ggacctaactgataataagtatgcataatcagggacttaatagtaa----gttgatgtttaatagaaaattgattttgtacaaaagagagaattatatga 6613831  T
Q  232 catttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcac 331  Q
    |||||               ||||||||||| |||||| |||||||||| | |||||||||||||||||||||| | |||| |  |||| ||||||||||    
T  6613832 cattt---------------aaggatttagggatttgagattcaatttggggatattgatttttggttcagggaacaaagtaataatttcctactttcac 6613916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 26518407 - 26518280
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagg 303  Q
    |||||||||||||||| |||||| |||| |||||||||||  |   ||  |||||||||||||||| ||||||||||   |||||| |||| |||||||     
T  26518407 attttgaacaaaagagggaattagatgagatttagggattaaa---ttcgggatttaggaatttgagattcaatttggagatattggttttcggttcaga 26518311  T
Q  304 gacccaagtgaccattttctactttcacttt 334  Q
    |||| ||||||||||||||||| ||||||||    
T  26518310 gaccaaagtgaccattttctaccttcacttt 26518280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 51453552 - 51453652
Alignment:
Q  215 aagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtga 314  Q
    |||||| ||||||| || ||||| |||||||||||||||||||||||| |||||| |||||||||| | |||||||||| || |||||||| | ||||||    
T  51453552 aagagataattatacgatatttaaggatttgagatttaaggatttagggatttgaaattcaatttgcggatattgatttatgattcagggatcaaagtga 51453651  T
Q  315 c 315  Q
    |    
T  51453652 c 51453652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 350
Target Start/End: Complemental strand, 11830214 - 11830064
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaagg----atttaggaatttgatattcaatttgagaatattgatttttggtt 299  Q
    |||||||||| |||||| ||||| |||| ||||||||||||  |||| ||      ||||| |||||||| ||||||||| || ||||||||||||||||    
T  11830214 attttgaacagaagagataattagatgagatttagggatttatgattaaattcaaaatttaagaatttgagattcaattttaggatattgatttttggtt 11830115  T
Q  300 cagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |  ||| | || |||||||||||||||||||||||  ||| ||||||||||    
T  11830114 ctaggatcaaaatgaccattttctactttcactttaatccatgtgacacct 11830064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 25038149 - 25038056
Alignment:
Q  257 tttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||| |||||| |||||||||  | |||||||||||||||||||||||| ||||||  |||||||||||||||||| || | ||||||||||    
T  25038149 tttagggatttgagattcaatttagggatattgatttttggttcagggaccaaagtgataattttctactttcactttagttcatgtgacacct 25038056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 25043361 - 25043268
Alignment:
Q  257 tttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||| |||||| |||||||||  | |||||||||||||||||||||||| ||||||  |||||||||||||||||| || | ||||||||||    
T  25043361 tttagggatttgagattcaatttagggatattgatttttggttcagggaccaaagtgataattttctactttcactttagttcatgtgacacct 25043268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 8975400 - 8975337
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||||||||||||  |||||| |||||||||||||||||||||||||| ||||||||||||    
T  8975400 atattgatttttggtttcgggaccaaagtgaccattttctactttcactttagtccctgtgaca 8975337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 3117918 - 3117824
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||| ||||||||||||||||| | ||||| |||||||||||| ||||  || ||| ||||||||||||||||||| |||  ||||||||||    
T  3117918 atttagggatttgatattcaatttggggatattaatttttggttcaaggactaaaatgatcattttctactttcactttagtcattgtgacacct 3117824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 348
Target Start/End: Complemental strand, 5782665 - 5782551
Alignment:
Q  234 tttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactt 333  Q
    |||||||||||| ||||||||||||||||||| ||| ||| |  ||| | |||||||||||||||| |||||   ||||||| ||||| || ||||||||    
T  5782665 tttagggatttgtgatttaaggatttaggaatgtgagattgatattggggatattgatttttggtttagggattaaagtgacaattttttagtttcactt 5782566  T
Q  334 tggtccctgtgacac 348  Q
    | |||| ||||||||    
T  5782565 tagtccatgtgacac 5782551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 25038240 - 25038133
Alignment:
Q  139 aactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttag 238  Q
    ||||||||||||||||||| ||| |||||||||||| |||    ||||   |||||| ||||||  | |||||||||||| ||||||||||||| |||||    
T  25038240 aactgatagtaagtatgcacagtaagggacctaacaataa----gttggtgttaatggaagattgttcttgaacaaaagaaagaattatatgacttttag 25038145  T
Q  239 ggatttgagatt 250  Q
    ||||||||||||    
T  25038144 ggatttgagatt 25038133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 25043452 - 25043345
Alignment:
Q  139 aactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttag 238  Q
    ||||||||||||||||||| ||| |||||||||||| |||    ||||   |||||| ||||||  | |||||||||||| ||||||||||||| |||||    
T  25043452 aactgatagtaagtatgcacagtaagggacctaacaataa----gttggtgttaatggaagattgttcttgaacaaaagaaagaattatatgacttttag 25043357  T
Q  239 ggatttgagatt 250  Q
    ||||||||||||    
T  25043356 ggatttgagatt 25043345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 350
Target Start/End: Complemental strand, 22857001 - 22856855
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaata 286  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||        ||||||||        || |||||||||||| |||    
T  22857001 tgtttaatgaaagattgatttttaacaaaagagagaattagatgacattcagggattc-------aaggattt--------gagattcaatttgaggata 22856917  T
Q  287 ttgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||| |||||||||||| ||  |||||| ||||||||||||||||||| ||  |||||||||||    
T  22856916 ttgaattttggttcaggaactaaagtgatcattttctactttcactttagt--ctgtgacacct 22856855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 34085790 - 34085706
Alignment:
Q  257 tttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccct 341  Q
    ||||||||||||| |||||||||| | |||||||||||||||||| | | | |||||| ||||||||||||||| ||| ||||||    
T  34085790 tttaggaatttgaaattcaatttggggatattgatttttggttcaagcatcaaagtgatcattttctactttcattttagtccct 34085706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 347
Target Start/End: Complemental strand, 16249913 - 16249821
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    |||||||| |||| | |||||||||  | ||||||||||| |||||||||||  || ||||||||||||||||||||||| | |||| |||||    
T  16249913 gatttagggatttaagattcaatttagggatattgattttcggttcagggactaaaatgaccattttctactttcactttagcccctatgaca 16249821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 39977586 - 39977507
Alignment:
Q  271 attcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||| ||||||||||||||||||| |||| |||| | |||||||||| |  ||||| |||| ||||||||||    
T  39977586 attcaatttgaggatattgatttttggttcagagaccaaagttatcattttctacatctactttagtccttgtgacacct 39977507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 23704006 - 23703948
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggattt 244  Q
    |||||||||| || ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  23704006 gtgtttaatggaaaattaattttgaacaaaagagataattagatgacatttagagattt 23703948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 1001392 - 1001323
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgt 353  Q
    ||||||||||| |||||| ||| | |||| || |||||||||||||||||| |||| |||||||||||||    
T  1001392 atattgattttcggttcaaggatcaaagtaactattttctactttcactttagtccatgtgacaccttgt 1001323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 1407869 - 1407803
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||| ||||| |||||| ||||| ||||||  |||||||||||||||||| |||| ||||||||||    
T  1407869 atattaattttcggttcaaggaccaaagtgataattttctactttcactttagtccatgtgacacct 1407803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 29766164 - 29766114
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    |||||||||||| ||||||||||| ||||||| |||||||| |||||||||    
T  29766164 atattgattttttgttcagggaccaaagtgacaattttctattttcacttt 29766114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 34085893 - 34085794
Alignment:
Q  136 cctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgt-gtttaatgaaagattaattttgaacaaaagagagaattatatgacat 234  Q
    ||||||||||||||| |||||||||||| |||  ||||| |||    ||||| | |||| | |||||| ||||||||||||||| ||||||| |||||||    
T  34085893 cctaactgatagtaaatatgcatagtcaaggatataacagtaa----gttgttgattaaaggaagattgattttgaacaaaagaaagaattagatgacat 34085798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 44720729 - 44720795
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||||| |||||| | ||| ||||||| |||||||||||||||||| |||  ||||||||||    
T  44720729 atattgattttcggttcaagaaccaaagtgacaattttctactttcactttagtcagtgtgacacct 44720795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 39726539 - 39726618
Alignment:
Q  254 ggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||||| |||||  ||||||||||   ||||||||||||||||||||| |  || |||| ||||||||||||||||||    
T  39726539 ggatttagggatttggaattcaatttggtgatattgatttttggttcaggg-ctaaaatgactattttctactttcacttt 39726618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 11060667 - 11060717
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    |||||||||||  ||||||||| | ||||||| ||||||||||||||||||    
T  11060667 atattgattttctgttcagggatcaaagtgacaattttctactttcacttt 11060717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 44719591 - 44719521
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgta 354  Q
    |||||||||||  ||||||||| | ||||||| |||||||||||||| ||| || | |||||||| |||||    
T  44719591 atattgattttcagttcagggagcaaagtgacaattttctactttcattttagttcatgtgacacattgta 44719521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 17588842 - 17588802
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggattt 244  Q
    |||||||||||||||||| |||| |||| ||||||||||||    
T  17588842 attttgaacaaaagagaggattaaatgagatttagggattt 17588802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 39725573 - 39725513
Alignment:
Q  291 tttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacctt 351  Q
    ||||||||| ||||||  |||||| ||||||||||||||| ||| ||||||  ||||||||    
T  39725573 tttttggttaagggactgaagtgatcattttctactttcattttagtcccttcgacacctt 39725513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 47878125 - 47878478
Alignment:
Q  1 tatcatttgaatatatcttgagctcttgattaccgtatactcaagcctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 100  Q
    ||||||||||||||||||||||||||||||||  ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47878125 tatcatttgaatatatcttgagctcttgattattgtatacttagacctacggggtagagatatgaattatcatgtgaatataacaataatcaagagtaat 47878224  T
Q  101 agatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaaga 200  Q
    | |||  ||| ||||||  ||||||||||| |||| |||||| ||                  ||||||||| | |    ||||||||||||||| ||||    
T  47878225 aaatgccaatagatttgctaattcattgtctgggaactaacttat------------------gggacctaatagt----aagttgtgtttaatggaaga 47878302  T
Q  201 ttaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttc 300  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  47878303 ttaattttgagcaaaagagagaattagatgagatttagggatttgtgatttaagaatttaggaatttgatattcaattttggaatattgatttttggttc 47878402  T
Q  301 agggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| |||||||    
T  47878403 agggaccaaagtgaccattttctactttcactttggtccctatgacacctcatatgcgccacatcatcgcttaaca 47878478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 120 - 376
Target Start/End: Complemental strand, 54574806 - 54574554
Alignment:
Q  120 aattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagag 219  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||    ||||||||||||| |||||||||||||||| ||||||    
T  54574806 aattcattgttagggacctaactgatagtaagtatgcacagttagggacctaacagtaa----gttgtgtttaatggaagattaattttgaactaaagag 54574711  T
Q  220 agaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccatt 319  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| | |||||| ||||    
T  54574710 agaattagatgacatttagggatttgagatttaaggagttaggaatttgatattcaatttgagaattttgatttttggttcggggatcaaagtgatcatt 54574611  T
Q  320 ttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    |||||||||||||| |||||| |||||||||  |||||| || |||||||| |||||    
T  54574610 ttctactttcacttcggtccccgtgacacctcatatgcgtcatatcatcacctaaca 54574554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 102 - 291
Target Start/End: Original strand, 42278727 - 42278912
Alignment:
Q  102 gatgttaatggatttgtcaattcattgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagat 201  Q
    |||| |||| ||||||  ||||||||||||| |||||||||||||||||||||||| || ||| ||||||||| |||    || |||||||||| |||||    
T  42278727 gatgctaatagatttgctaattcattgtcagagacctaactgatagtaagtatgcacagccagagacctaacagtaa----gtcgtgtttaatggaagat 42278822  T
Q  202 taattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgat 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  42278823 taattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttagaaatttgatattcaatttgggaatattgat 42278912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 129 - 376
Target Start/End: Complemental strand, 42278413 - 42278178
Alignment:
Q  129 tcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaattata 228  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||  |   | |||||||||| |||||| ||||||||||||| ||| | ||| |    
T  42278413 tcagggacctaactgatagtaaatatgcttagtcagggacctaacagtaggt---tggtgtttaatggaagatttattttgaacaaaaaagata-ttaga 42278318  T
Q  229 tgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctacttt 328  Q
    ||||| ||| |||||| ||||||| ||||||        ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||    
T  42278317 tgacagttaaggatttaagatttagggattt--------gatattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctagttt 42278226  T
Q  329 cactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  42278225 cactttggtccctgtgacacctcatatgcaccacatcatcacttaaca 42278178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 127 - 378
Target Start/End: Complemental strand, 47874930 - 47874690
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaaga-gagaatt 225  Q
    ||||||||||| |||||||||||||||||   |||||||||||||||| ||     ||||||||||||| |||||| ||||||||||||| | || ||||    
T  47874930 tgtcagggacccaactgatagtaagtatgttcagtcagggacctaacagtag----gttgtgtttaatggaagattgattttgaacaaaaaaagataatt 47874835  T
Q  226 atatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctac 325  Q
    |||||||||||| |||||| ||||||| ||||||        ||||||||||||  | |||||||||||||||||| ||||| ||||||||||||| |||    
T  47874834 atatgacatttaaggatttaagatttagggattt--------gatattcaattttgggatattgatttttggttcaaggaccaaagtgaccattttatac 47874743  T
Q  326 tttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaacata 378  Q
    ||||||||||||||||||||||| |  |||||||||| |||||| ||||||||    
T  47874742 tttcactttggtccctgtgacacatcatatgcgccacctcatcatttaacata 47874690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 134 - 350
Target Start/End: Original strand, 20599647 - 20599854
Alignment:
Q  134 gacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttg-tgtttaatgaaagattaattttgaacaaaagagagaattatatgac 232  Q
    |||| |||||||| |||||||||| ||| |||||||||  |   | ||||||| ||||||||| |||||| ||||||||||||||||||||||| |||||    
T  20599647 gacccaactgataataagtatgcacagttagggacctataac--agtaagttggtgtttaatggaagattgattttgaacaaaagagagaattagatgac 20599744  T
Q  233 atttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcact 332  Q
    |||||| |||||| ||||        ||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||| |    
T  20599745 atttagagatttgcgatt--------taggaatttgagattcaatttgggaatattaatttttggttcagggaccaaagtgaccattttttactttcatt 20599836  T
Q  333 ttggtccctgtgacacct 350  Q
    || |||||||||||||||    
T  20599837 ttagtccctgtgacacct 20599854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 185 - 348
Target Start/End: Complemental strand, 4702103 - 4701940
Alignment:
Q  185 tgtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaa 284  Q
    ||||||||||| ||||||  |||||||||||| ||||||||| ||||||| |||||||||||||| || ||||||||  |||||| ||||||||| || |    
T  4702103 tgtgtttaatggaagattgtttttgaacaaaatagagaattaaatgacatgtagggatttgagatctagggatttagagatttgagattcaattttagga 4702004  T
Q  285 tattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||| ||||| |||||||||| ||||||| |||||||||||||||||| |||| ||||||||    
T  4702003 tattgacttttgtttcagggaccaaagtgactattttctactttcactttagtccatgtgacac 4701940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 187 - 339
Target Start/End: Original strand, 4703004 - 4703154
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaata 286  Q
    ||||||||| |||||| |||||||||||||||||  |||| |||||||||||||||||||||||||  |||| ||  |||||| |||||||||| | |||    
T  4703004 tgtttaatggaagattgattttgaacaaaagaga--attaaatgacatttagggatttgagatttagtgattcagagatttgagattcaatttggggata 4703101  T
Q  287 ttgatttttggttcagggacccaagtgaccattttctactttcactttggtcc 339  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||||| ||||    
T  4703102 ttgatttttgggtcagggaccaaagtgacaattttatactttcactttagtcc 4703154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 19051106 - 19051232
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||| ||| |      || |||||| |||||| |||||||||||||||| ||| ||    
T  19051106 tgtcagagacctaactgatagtaaatatgcacagtcagggacctaacaataagt------tgattaatggaagattgattttgaacaaaagagcgaacta 19051199  T
Q  227 tatgacatttagggatttgagatttaaggattt 259  Q
     ||||||||||| ||||||||||||| ||||||    
T  19051200 gatgacatttagagatttgagatttagggattt 19051232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 6039439 - 6039377
Alignment:
Q  187 tgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagat 249  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6039439 tgtttaatggaagattgattttgaacaaaagagagaattatatgacatttagggatttgagat 6039377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 42391757 - 42391854
Alignment:
Q  253 aggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||| |||||| | |||||||||  ||||  |||||| ||||||||||  |||||||||||||||||||||||||| |||| ||||||||||    
T  42391757 aggatttagggatttgagactcaatttgaagatatgaatttttagttcagggactaaagtgaccattttctactttcactttagtccatgtgacacct 42391854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 19050505 - 19050411
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||| |||||| |||||||||  | ||||||||||||| |||| ||||| |||||| |||||| |||||||||||| |||| ||||||||||    
T  19050505 atttagggatttgagattcaatttagggatattgatttttgcttcaaggaccaaagtgatcattttatactttcactttagtccatgtgacacct 19050411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 50694964 - 50694878
Alignment:
Q  290 atttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacaccttgtatgcgccacatcatcacttaaca 376  Q
    ||||||| ||||||||   ||||||| |||||||||||||| |||| ||||||||||||||  |||||| |||||||||||||||||    
T  50694964 atttttgattcagggattaaagtgacaattttctactttcattttgatccctgtgacacctcatatgcgacacatcatcacttaaca 50694878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 26685321 - 26685410
Alignment:
Q  259 taggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||| |||||| |||||| ||  ||||||||||||||||||||||||   || |||| |||||||||||||| ||| |||||||||||||    
T  26685321 tagggatttgagattcaagttatgaatattgatttttggttcagggattaaactgactattttctactttcattttagtccctgtgacac 26685410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 6039362 - 6039296
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||| ||||| |||||||||| | |||||||||||||||||  |||||||||||||| ||||||||    
T  6039362 atattaattttcggttcagggagcaaagtgaccattttctacactcactttggtccctatgacacct 6039296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 53770944 - 53771021
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactt 333  Q
    ||||||| |||||| |||||| ||| | ||||||||||||||||| | |||  ||||||| |||||||||||||||||    
T  53770944 atttagggatttgagattcaagttggggatattgatttttggttcggagactaaagtgacaattttctactttcactt 53771021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 19050552 - 19050488
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatt 250  Q
    |||||||||| || ||| ||||||||||||| ||||| ||| ||| |||||||||||||||||||    
T  19050552 gtgtttaatggaaaattgattttgaacaaaaaagagatttagatggcatttagggatttgagatt 19050488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 53770562 - 53770470
Alignment:
Q  256 atttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||||| ||||||||||||| ||| | |||||||||| || || || |||  |||||||||||||||| ||||| ||| ||| |||||||||    
T  53770562 atttagggatttgatattcaagttggggatattgatttctgctttagtgactaaagtgaccattttctattttcattttagtctctgtgacac 53770470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 24745782 - 24745829
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||||    
T  24745782 tgtcagggacctaactgatagtaattatacacagtcagggacctaaca 24745829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 24753282 - 24753325
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacct 170  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  24753282 tgtcagggacctaactgatagtaattatgcacagtcagggacct 24753325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 2786464 - 2786414
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||| |||||    
T  2786464 atattgattttcggttcagagaccaaagtgaccattttctacttttacttt 2786414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 21622241 - 21622191
Alignment:
Q  125 attgtcagggacctaactgatagtaagtatgcatagtcagggacctaacat 175  Q
    ||||| || |||||||||||||||||||||||| |||||| ||||||||||    
T  21622241 attgttagagacctaactgatagtaagtatgcacagtcagagacctaacat 21622191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 48739944 - 48740006
Alignment:
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||||||||||||||||||  ||||||| ||||| |||||||||||| |||  ||||||||    
T  48739944 attgatttttggttcagggactaaagtgactattttttactttcactttagtctttgtgacac 48740006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 32244515 - 32244450
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacc 349  Q
    ||||||||||| ||| ||| || | ||||||||||||| |||||||||||| ||| ||||||||||    
T  32244515 atattgattttcggtgcagagatcaaagtgaccattttttactttcactttagtctctgtgacacc 32244450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 38216715 - 38216621
Alignment:
Q  254 ggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||| ||||||||||||||||  | ||||||||| | | |||||| ||| ||| ||||||||  |||||||||||| |||| ||| ||||||    
T  38216715 ggatttagggatttgatattcaattttgggatattgattatcgattcaggaaccaaagggaccattt--tactttcactttagtccatgtaacacct 38216621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 21622064 - 21622000
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||||| ||||||||||||| | | ||||||||||||| |||||||||||| || | ||||||||    
T  21622064 atattggtttttggttcaggaatcaaagtgaccattttatactttcactttagtgcttgtgacac 21622000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 21623001 - 21623065
Alignment:
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||| ||||||  || | |||||||||||||||||||||| ||| ||| |||||||||||    
T  21623001 attgattttcggttcatagagcaaagtgaccattttctactttcattttagtctctgtgacacct 21623065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 42391688 - 42391736
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagattta 252  Q
    |||||||||||||||| |||| |||||| ||||| ||||||||||||||    
T  42391688 attttgaacaaaagagtgaatcatatgagatttacggatttgagattta 42391736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 21622849 - 21622896
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    ||||| ||||||||||||||||||||||||| | ||| ||||||||||    
T  21622849 tgtcatggacctaactgatagtaagtatgcacaatcatggacctaaca 21622896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 26172809 - 26172888
Alignment:
Q  271 attcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||  ||||||||||||||| |||||| ||  ||||||  |||||||||| ||||||| |||  ||||||||||    
T  26172809 attcaattttggaatattgatttttgattcaggaactaaagtgattattttctactgtcactttagtcattgtgacacct 26172888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 26170913 - 26170863
Alignment:
Q  255 gatttaggaatttgatattcaatttgagaatattgatttttggttcaggga 305  Q
    |||||||| |||| | |||||||||| ||||||||||||| ||||||||||    
T  26170913 gatttagggatttcaaattcaatttgggaatattgattttcggttcaggga 26170863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 350
Target Start/End: Original strand, 39870536 - 39870622
Alignment:
Q  264 atttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||| ||||||||||   || |||||||||||||| |||||  |||||||  ||||||||| |||||||  ||| ||||||||||    
T  39870536 atttgaaattcaatttggagattttgatttttggttcggggacgaaagtgacatttttctactctcactttattccttgtgacacct 39870622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 39869039 - 39869010
Alignment:
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  39869039 aacgtcagagactaaagtgataacggaagt 39869010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 31844866 - 31844910
Alignment:
Q  304 gacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    |||| ||||||||||||| |||||||||||| |||| ||||||||    
T  31844866 gaccaaagtgaccattttttactttcactttagtccttgtgacac 31844910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 127 - 334
Target Start/End: Original strand, 5985 - 6185
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgtgtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    |||||| ||||||||||||||||||||||||    ||||||||||||| ||| |   | |||||||||  |||||| ||||||||||||||||| |||||    
T  5985 tgtcagagacctaactgatagtaagtatgca----cagggacctaacagtaagt---tggtgtttaattgaagattgattttgaacaaaagagataatta 6077  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||  ||||| | |||||||||||||||||||||||| ||||||||||||| ||||    
T  6078 tatgacatttagggatttgagatttagggatttaggaatttgagattatatttggggatattgatttttggttcagggaccaaagtgaccattttttact 6177  T
Q  327 ttcacttt 334  Q
    ||||||||    
T  6178 ttcacttt 6185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 350
Target Start/End: Complemental strand, 5921 - 5772
Alignment:
Q  186 gtgtttaatgaaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaat 285  Q
    |||||||||| |||||| ||||||||||||||||||||||| |||||               ||||||||| ||||| |||||| ||| |||||||| ||    
T  5921 gtgtttaatggaagattgattttgaacaaaagagagaattagatgac---------------atttaaggaattagggatttgagatttaatttgaggat 5837  T
Q  286 attgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    |||||||||||||||||||| | ||||||||| ||| |||||||||||| |||  ||||||||||    
T  5836 attgatttttggttcagggatcaaagtgaccactttttactttcactttagtctatgtgacacct 5772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 128 - 356
Target Start/End: Original strand, 31239716 - 31239941
Alignment:
Q  128 gtcagggacctaactgatagtaagtatgcatagtcagggacctaacattaattaagttgt-gtttaatgaaagattaattttgaacaaaagagagaatta 226  Q
    ||||||| | ||| |||||||||||||||| |||||  || |||||| |||    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  31239716 gtcaggggcgtaattgatagtaagtatgcacagtcacagatctaacagtaa----gttgttgtttaatgaaaaattaattttgaacaaaagagagaatta 31239811  T
Q  227 tatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctact 326  Q
     | || ||||| |||||||||||||| ||||||| | |||||| |||||||||| | |||||||||||||||||| | ||  ||||||||||||||||||    
T  31239812 gacgatatttaaggatttgagatttagggatttaaggatttgagattcaatttggggatattgatttttggttcaagaacaaaagtgaccattttctact 31239911  T
Q  327 ttcactttggtccctgtgacaccttgtatg 356  Q
    || ||||| || | ||||||||||| ||||    
T  31239912 ttgactttagttcatgtgacaccttatatg 31239941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 30748237 - 30748167
Alignment:
Q  278 ttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacac 348  Q
    ||||| ||||||||||||| |||||||||| || |||||||||| |||||||||||| |||||||||||||    
T  30748237 ttgaggatattgatttttgattcagggaccaaattgaccattttttactttcactttagtccctgtgacac 30748167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 19600096 - 19600189
Alignment:
Q  253 aggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgaca 347  Q
    ||||||||||||| ||| |||||||||  | ||||| ||||| | || ||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  19600096 aggatttaggaatctgagattcaatttagggatattaattttcgatttagg-accaaagtgaccattttctactttcactttagtccctgtgaca 19600189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 29845819 - 29845764
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggattt 259  Q
    ||||||||||||||||| ||||| |||| |||||| |||||| |||||| ||||||    
T  29845819 attttgaacaaaagagataattaaatgagatttagagatttgtgatttagggattt 29845764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 29857084 - 29857029
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggattt 259  Q
    ||||||||||||||||| ||||| |||| |||||| |||||| |||||| ||||||    
T  29857084 attttgaacaaaagagataattaaatgagatttagagatttgtgatttagggattt 29857029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 30748362 - 30748315
Alignment:
Q  127 tgtcagggacctaactgatagtaagtatgcatagtcagggacctaaca 174  Q
    |||||||||||||||| | ||||||||| || ||||||||||||||||    
T  30748362 tgtcagggacctaactaacagtaagtatacacagtcagggacctaaca 30748315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 6468733 - 6468783
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcacttt 334  Q
    |||||||||||||||||| | ||| || ||| |||||||||||||||||||    
T  6468733 atattgatttttggttcaagaaccaaattgatcattttctactttcacttt 6468783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 29856986 - 29856920
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||||| | ||||| |||| || |||||||||||||||| ||||||  ||| ||||||||||    
T  29856986 atattgattttcgattcagagaccaaaatgaccattttctacttccactttaatccttgtgacacct 29856920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 31219164 - 31219193
Alignment:
Q  387 aacgtcagagactaaagtgataacggaagt 416  Q
    ||||||||||||||||||||||||||||||    
T  31219164 aacgtcagagactaaagtgataacggaagt 31219193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 350
Target Start/End: Complemental strand, 79368 - 79248
Alignment:
Q  230 gacatttagggatttgagatttaaggatttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttc 329  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||||  | ||||||||||||  |||||||||| |||||| |||||||| |||||    
T  79368 gacatttaggtatttgagatttaaggatttaggaattcgagattcaatttaggcatattgattttttattcagggaccaaagtgatcattttcttctttc 79269  T
Q  330 actttggtccctgtgacacct 350  Q
    | ||| |||||||||| ||||    
T  79268 attttagtccctgtgagacct 79248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 36400 - 36473
Alignment:
Q  257 tttaggaatttgatattcaatttgagaatattgatttttggttcagggacccaagtgaccattttctactttca 330  Q
    |||||| ||||||  |||||||| || ||||||||||| |||||||||| | ||||||||||||||||||||||    
T  36400 tttagggatttgagtttcaattttaggatattgattttcggttcagggatcaaagtgaccattttctactttca 36473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 36339 - 36383
Alignment:
Q  224 ttatatgacatttagggatttgagatttaaggatttaggaatttg 268  Q
    |||||||| ||||| |||||||| | |||||||||||||||||||    
T  36339 ttatatgagatttaaggatttgaaagttaaggatttaggaatttg 36383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 2024 - 1969
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggattt 259  Q
    ||||||||||||||||| ||||| |||| |||||| |||||| |||||| ||||||    
T  2024 attttgaacaaaagagataattaaatgagatttagagatttgtgatttagggattt 1969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 3286 - 3231
Alignment:
Q  204 attttgaacaaaagagagaattatatgacatttagggatttgagatttaaggattt 259  Q
    ||||||||||||||||| ||||| |||| |||||| |||||| |||||| ||||||    
T  3286 attttgaacaaaagagataattaaatgagatttagagatttgtgatttagggattt 3231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 3188 - 3122
Alignment:
Q  284 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacct 350  Q
    ||||||||||| | ||||| |||| || |||||||||||||||| ||||||  ||| ||||||||||    
T  3188 atattgattttcgattcagagaccaaaatgaccattttctacttccactttaatccttgtgacacct 3122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 142628 - 142587
Alignment:
Q  134 gacctaactgatagtaagtatgcatagtcagggacctaacat 175  Q
    ||||||||||||||||||||||||||||  | ||||||||||    
T  142628 gacctaactgatagtaagtatgcatagttggtgacctaacat 142587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University