View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_15 (Length: 454)
Name: NF15659_low_15
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 4753203 - 4753624
Alignment:
| Q |
16 |
atgaagagattgaaattttgaaactgatcgtgacacgatttttctacattatggcacgattttacattgatgcctcgtgacacgtaagacaagtgaagga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4753203 |
atgaagagattgaaattttgaaactgatcgtgacacgatttttctacattatggcacgattttacattgatgcctcgtgacacgtaagacaagtgaagga |
4753302 |
T |
|
| Q |
116 |
tcacgctacgacctatgagcatcgtggcaggtttaatcgaccaaggattttctaacaaagctcattttccattctaagcaagggttcgattttttgagat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4753303 |
tcacgctacgacctatgagcatcgtggcaggtttaatcgaccaaggattttctaataaagctcattttccattctaagcaagggttcgattttttgagat |
4753402 |
T |
|
| Q |
216 |
tttaaagacatatttgcatattaggtttgaggatttcatggtgtctcaccatacagttgttcctcatttcatgtaatatattcaaatatattaattgttt |
315 |
Q |
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| T |
4753403 |
tttaaagacatatttgcatattaggcttgaggatttcatggtgtctcaccatacagttgttcctcatttcatgtaatatattcaaatatattaattgttt |
4753502 |
T |
|
| Q |
316 |
atgctttagtcataagtagctaatttattttggattaggtcttggatgaatctatttccagctgattgaaacatgtagttgtgaaactatattcaatgca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4753503 |
atgctttagtcataagtagctaatttattttggattaggttttggatgaatctattttcagctgattgaaacatgtagttgtgaaactatattcaatgca |
4753602 |
T |
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| Q |
416 |
attacaatcctagtatgtattc |
437 |
Q |
| |
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|||||||| ||||| ||||||| |
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| T |
4753603 |
attacaattctagtctgtattc |
4753624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 4741917 - 4742022
Alignment:
| Q |
29 |
aattttgaaactgatcgtgacacgatttttctacattatggcacgattttacattgatgcctcgtgacacgtaagacaagtgaaggatcacgctacgacc |
128 |
Q |
| |
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|||| ||||||| |||||||||| || || ||||||| |||||| || ||||||||||| || | ||| ||||||||||||| ||||||| |||| | |
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| T |
4741917 |
aattctgaaactaatcgtgacacaatattgctacattgtggcacaatgttacattgatgtttcctaacataaaagacaagtgaagtatcacgccacgatc |
4742016 |
T |
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| Q |
129 |
tatgag |
134 |
Q |
| |
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|||||| |
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| T |
4742017 |
tatgag |
4742022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 425
Target Start/End: Original strand, 26390724 - 26390871
Alignment:
| Q |
276 |
tcctcatttcatgtaatatattcaaatatattaattgtttatgctttagtcataagtagctaatttattttggattaggtcttggatgaatctatttcca |
375 |
Q |
| |
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|||| ||| |||||||| |||||||| ||||| ||||| ||| ||||| ||| || | |||||||| | |||||||||||||||||||| ||| | | |
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| T |
26390724 |
tccttattgcatgtaatgtattcaaacttattagttgtt-atgttttagccatgaggaactaatttaccattgattaggtcttggatgaatcgattacaa |
26390822 |
T |
|
| Q |
376 |
gctgattgaaacatgtagttgtgaaactatattcaatgcaattacaatcc |
425 |
Q |
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| T |
26390823 |
t-tgtttgaaccatgtaattttgaaactctattcaattcaattacaatcc |
26390871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 21023825 - 21023781
Alignment:
| Q |
381 |
ttgaaacatgtagttgtgaaactatattcaatgcaattacaatcc |
425 |
Q |
| |
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||||| |||||| |||||||||| |||||||| |||||||||||| |
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| T |
21023825 |
ttgaaccatgtaattgtgaaactctattcaattcaattacaatcc |
21023781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 19355323 - 19355263
Alignment:
| Q |
304 |
tattaattgtttatgctttagtcataagtagctaatttattttggattaggtcttggatga |
364 |
Q |
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||||| ||||||||| |||||||||| ||| |||||| |||| ||||||||||| ||||| |
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| T |
19355323 |
tattagttgtttatgttttagtcataggtaactaattcatttgtgattaggtcttagatga |
19355263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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