View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_low_19 (Length: 423)

Name: NF15659_low_19
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_low_19
NF15659_low_19
[»] chr6 (3 HSPs)
chr6 (262-416)||(92308-92462)
chr6 (265-335)||(10895582-10895652)
chr6 (261-313)||(30797691-30797743)
[»] chr4 (5 HSPs)
chr4 (262-400)||(55403334-55403474)
chr4 (161-262)||(54745741-54745842)
chr4 (161-262)||(54762468-54762569)
chr4 (161-262)||(54769922-54770023)
chr4 (259-335)||(22460462-22460538)
[»] chr7 (3 HSPs)
chr7 (262-381)||(37125553-37125672)
chr7 (293-366)||(17264880-17264953)
chr7 (262-310)||(11033487-11033535)
[»] chr2 (4 HSPs)
chr2 (262-403)||(43326101-43326242)
chr2 (262-336)||(4009254-4009328)
chr2 (259-368)||(36620159-36620268)
chr2 (262-331)||(29522579-29522648)
[»] chr1 (4 HSPs)
chr1 (263-379)||(12307880-12307996)
chr1 (262-337)||(5733161-5733236)
chr1 (262-366)||(51285246-51285350)
chr1 (262-336)||(19659733-19659806)
[»] scaffold0026 (1 HSPs)
scaffold0026 (255-368)||(91551-91664)
[»] scaffold1342 (1 HSPs)
scaffold1342 (262-336)||(1227-1301)
[»] chr5 (2 HSPs)
chr5 (262-332)||(3805677-3805747)
chr5 (262-313)||(22775942-22775993)
[»] chr8 (2 HSPs)
chr8 (266-368)||(30253394-30253496)
chr8 (261-306)||(21468244-21468289)
[»] chr3 (1 HSPs)
chr3 (264-310)||(18478411-18478457)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 262 - 416
Target Start/End: Original strand, 92308 - 92462
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||    
T  92308 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaacca 92407  T
Q  362 tgccattgacccactctctcccactcccactctctcattcgttttcttcttctca 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92408 tgccattgacccactctctcccactcccactctctcattcgttttcttcttctca 92462  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 10895652 - 10895582
Alignment:
Q  265 tggcggagccacatggggacaggg-tatggccatggcctacccattaattctgtgaaattactataataccc 335  Q
    ||||||||||||||| |||| ||| |||| |||||||||||||||| |||||||||||  ||||||||||||    
T  10895652 tggcggagccacatgaggactggggtatg-ccatggcctacccatttattctgtgaaaagactataataccc 10895582  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 30797691 - 30797743
Alignment:
Q  261 acagtggcggagccacatggggacagggtatggccatggcctacccattaatt 313  Q
    |||| |||||||| || |||||||||||  ||||||||| |||||||||||||    
T  30797691 acaggggcggagcgacttggggacaggggctggccatggtctacccattaatt 30797743  T

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Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 262 - 400
Target Start/End: Original strand, 55403334 - 55403474
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 361  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  55403334 cagtggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 55403433  T
Q  362 tgccattgacccactctctccc--actcccactctctcatt 400  Q
    ||||||||||||||||||||||  |||||| ||||||||||    
T  55403434 tgccattgacccactctctcccagactcccgctctctcatt 55403474  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 54745842 - 54745741
Alignment:
Q  161 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54745842 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54745743  T
Q  261 ac 262  Q
    ||    
T  54745742 ac 54745741  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 54762569 - 54762468
Alignment:
Q  161 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54762569 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54762470  T
Q  261 ac 262  Q
    ||    
T  54762469 ac 54762468  T

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Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 54770023 - 54769922
Alignment:
Q  161 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54770023 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54769924  T
Q  261 ac 262  Q
    ||    
T  54769923 ac 54769922  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 22460538 - 22460462
Alignment:
Q  259 agacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccc 335  Q
    ||||||||||||||||||||| |||| |||  |||||||  |||||||||| ||| |||||||  ||||||||||||    
T  22460538 agacagtggcggagccacatgtggactgggattggccataacctacccatttattttgtgaaaagactataataccc 22460462  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 262 - 381
Target Start/End: Original strand, 37125553 - 37125672
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 361  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  37125553 cagtggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaacca 37125652  T
Q  362 tgccattgacccactctctc 381  Q
    |||||||||| |||||||||    
T  37125653 tgccattgactcactctctc 37125672  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 17264953 - 17264880
Alignment:
Q  293 gccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccatgcca 366  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||  |  |||||||||| |||| | |||||||    
T  17264953 gccatggcctacccatttattttgtgaaaagactataatacccttgaagtaattttaatattactatcatgcca 17264880  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 11033487 - 11033535
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccatta 310  Q
    ||||||||||||||| || |||||||| ||||||||||||  |||||||    
T  11033487 cagtggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 262 - 403
Target Start/End: Original strand, 43326101 - 43326242
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 361  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 43326200  T
Q  362 tgccattgacccactctctcccactcccactctctcattcgt 403  Q
    || ||| |||||||| || |  ||||||||||||||||||||    
T  43326201 tgtcatcgacccactatcccaaactcccactctctcattcgt 43326242  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 4009254 - 4009328
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 336  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  4009254 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattataccct 4009328  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 368
Target Start/End: Complemental strand, 36620268 - 36620159
Alignment:
Q  259 agacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaa 358  Q
    |||||||||||||||||| || |||| ||||||||| ||| ||| |||||||||| ||||||||||| |||||||||| ||  |||||| ||| |||||     
T  36620268 agacagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaatattacag 36620169  T
Q  359 ccatgccatt 368  Q
    | ||||||||    
T  36620168 ctatgccatt 36620159  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 29522648 - 29522579
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataat 331  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  29522648 cagtggcggagccacgtgtggactgggtatggccatggcctacccatttattttgtgaaaatactataat 29522579  T

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Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 263 - 379
Target Start/End: Complemental strand, 12307996 - 12307880
Alignment:
Q  263 agtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccat 362  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  12307996 agtggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaattactataatacctttggtataattttaattttacaaccat 12307897  T
Q  363 gccattgacccactctc 379  Q
     ||||||||||||||||    
T  12307896 accattgacccactctc 12307880  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 5733161 - 5733236
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctc 337  Q
    ||||||||||||||| ||||||| ||| |||||||| |||||||||||| || || |||||||| || ||||||||    
T  5733161 cagtggcggagccacttggggactggggatggccatagcctacccattatttatgagaaattacaattataccctc 5733236  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 51285246 - 51285350
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 361  Q
    ||||||||||||||| ||||||||||| | ||||||||||  ||||||| || || |||||||| | |||||||| ||  |||| | || | ||||||||    
T  51285246 cagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacca 51285345  T
Q  362 tgcca 366  Q
    |||||    
T  51285346 tgcca 51285350  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 19659806 - 19659733
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 336  Q
    |||||||||||||||||| ||||  || ||||||||||||| ||||||| || || ||||||||||| |||||||    
T  19659806 cagtggcggagccacatgaggaccagg-atggccatggcctccccattatttttgggaaattactattataccct 19659733  T

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Target: scaffold0026 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 368
Target Start/End: Original strand, 91551 - 91664
Alignment:
Q  255 ttagagacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaatttt 354  Q
    ||||| ||||||| |||||||| || ||||||||||||||||||||||||||| || |||||||||||||  ||||||||||    ||||||||||| ||    
T  91551 ttagaaacagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttgtcataattttaatatt 91650  T
Q  355 acaaccatgccatt 368  Q
    |||||||| |||||    
T  91651 acaaccattccatt 91664  T

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Target: scaffold1342 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 1227 - 1301
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 336  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  1227 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattataccct 1301  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 3805747 - 3805677
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataata 332  Q
    ||||||| ||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  3805747 cagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataata 3805677  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 313
Target Start/End: Original strand, 22775942 - 22775993
Alignment:
Q  262 cagtggcggagccacatggggacagggtatggccatggcctacccattaatt 313  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||||||    
T  22775942 cagtggcggagccacttggggacaggggctggccatagcctacccattaatt 22775993  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 30253496 - 30253394
Alignment:
Q  266 ggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccatgcc 365  Q
    ||||||||||||||||    ||| ||||| |||||||| |||||| || || ||||||||||| |||||||| || | |||| ||  |||||| ||||||    
T  30253496 ggcggagccacatgggatttggggatggcaatggcctatccattatttttgggaaattactattataccctctatgttatttgaaaattacaaacatgcc 30253397  T
Q  366 att 368  Q
    |||    
T  30253396 att 30253394  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 21468244 - 21468289
Alignment:
Q  261 acagtggcggagccacatggggacagggtatggccatggcctaccc 306  Q
    |||||||||||| ||| || ||||| ||||||||||||||||||||    
T  21468244 acagtggcggagacacgtgaggacatggtatggccatggcctaccc 21468289  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 18478457 - 18478411
Alignment:
Q  264 gtggcggagccacatggggacagggtatggccatggcctacccatta 310  Q
    |||| |||||||||||||||| ||| ||||||| |||||||||||||    
T  18478457 gtggtggagccacatggggactggggatggccaaggcctacccatta 18478411  T

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