View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_21 (Length: 402)
Name: NF15659_low_21
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 87 - 386
Target Start/End: Complemental strand, 48904531 - 48904229
Alignment:
| Q |
87 |
tggtcataacactctttatgtattaaataagggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatc |
186 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904531 |
tggtcataacactatttatgtattaaataagggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatc |
48904432 |
T |
|
| Q |
187 |
accagattttattccattgagtttccttgctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaa |
286 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904431 |
accagattttattccattgagttttcttgctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaa |
48904332 |
T |
|
| Q |
287 |
caaaaatgtt---agagttaatataagtaaacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcatttctctctttctgaagt |
383 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904331 |
caaaaatgttaaaagagttaatataagtaaacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcatttctctctttctgaagt |
48904232 |
T |
|
| Q |
384 |
taa |
386 |
Q |
| |
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||| |
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| T |
48904231 |
taa |
48904229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48904617 - 48904569
Alignment:
| Q |
1 |
tcaccacttacaatcatttcaaaatctgagatttacatgagtttctccc |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904617 |
tcaccacttacaatcatttcaaaatctgagatttacatgagtttctccc |
48904569 |
T |
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