View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_24 (Length: 383)
Name: NF15659_low_24
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 40363509 - 40363147
Alignment:
| Q |
18 |
caattcttatggaaaattgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtgtgaccatcttcatattgaactacg |
117 |
Q |
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| T |
40363509 |
caattcttatggaaaatcgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtgtgaccatcttcatattgaactacg |
40363410 |
T |
|
| Q |
118 |
aaccacccagcatcattggtatagtcaattaccctccccgacaaaatatttcccatatacaatactatttggaactcccttcccaagaaccattcgaaat |
217 |
Q |
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| T |
40363409 |
aaccacccagcatcattggtatagtcaattaccctccccgacaaaatatttcccatatacaatactatttggaactcccttcccaagaaccattcgaaat |
40363310 |
T |
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| Q |
218 |
ttccatcattgtccatttggaatagaaacctat------aagnnnnnnntcaattaaatagtatggagatataatctaatttctaagcaagattttaacc |
311 |
Q |
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| T |
40363309 |
ttccatcattgtccatttggaatagaaacctataaaaaaaaaaaaaaaatcaattaaatagtatggagatataatctaatttctaagcaagattttaacc |
40363210 |
T |
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| Q |
312 |
agagtttgaatgaaaccagtgagagtgtagtgtaataccgtaccagaatgttgatatattctt |
374 |
Q |
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| T |
40363209 |
agagtttgaatgaaaccaatgagagtgtagtgtaataccgtaccagaatgttgatatattctt |
40363147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 11346535 - 11346464
Alignment:
| Q |
22 |
tcttatggaaaattgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtgt |
94 |
Q |
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| T |
11346535 |
tcttatgcgaaattgtaaaatccaaaggacaaac-aatttccaacaactcctgccaataatgttcttctgtgt |
11346464 |
T |
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