View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_27 (Length: 371)
Name: NF15659_low_27
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 32546855 - 32547197
Alignment:
| Q |
18 |
atctccaatgagaacatttttgttgcttcccttgctacccttttgcctcataaacctcatcatcaatattgtttttgtgactagtcattctattggtgat |
117 |
Q |
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| T |
32546855 |
atctccaatgagaacaattttgttgcttcccttgctacccttttgcctcataaacctcatcatcaatattgtttttgtgactagtcattctattggtgat |
32546954 |
T |
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| Q |
118 |
caacaatctttgttgcttcaattgaagaacaacctcacattcaactcaaccatctcnnnnnnncttgttcattggaatacaagcaaaccttgttgtgaat |
217 |
Q |
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| T |
32546955 |
caacaatctttgttgcttcaattgaagaacaacctcacattcaactcaaccatctcaaaaaaacttgttcattggaatataagcaaaccttgttgtgaat |
32547054 |
T |
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| Q |
218 |
ggaatggagtaacatgcaacaacaaaggatatgttatagctcttgacttaagtcaagaattcatcaatggacaagttccaattgagatcttccaaatacc |
317 |
Q |
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| T |
32547055 |
ggaatggagtaacatgcaacaacaaaggacatgttatagctcttgacttaagtcatgaattcatcaatggaaaatttccaattgagatcttccaaatacc |
32547154 |
T |
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| Q |
318 |
ctcactacaagtgcttgatgtttcttataaccttggtcttcat |
360 |
Q |
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| T |
32547155 |
ctcactacaagtgcttgatgtttcttataaccttggtcttcat |
32547197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 3750088 - 3750041
Alignment:
| Q |
115 |
gatcaacaatctttgttgcttcaattgaagaacaacctcacattcaac |
162 |
Q |
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| T |
3750088 |
gatcaacaatcattgttgcttcaattaaaaaacaatctcacattcaac |
3750041 |
T |
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