View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_28 (Length: 370)
Name: NF15659_low_28
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 25349074 - 25348735
Alignment:
| Q |
18 |
actattcctaagagttagtcctacatcaaatgttttacactttcaataactaaattaatgttttcctttctctacaggcagatcacctcaggcaacaaac |
117 |
Q |
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| T |
25349074 |
actattcctaagagttagtcctacatcaaatgttttacactttcaataactaaattaatgttttcctttctctacaggcagatcacctcaggcaacaaac |
25348975 |
T |
|
| Q |
118 |
tctggtgtacatgtctcgtatcttgacaattgcgcaagctgctaaaggcttgctggctatgggggattactttcaccgtcttcgcacttgtagttctttg |
217 |
Q |
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| T |
25348974 |
tctggtgtacatgtctcgtatcttgacaattgtgcaagctgctcaaggcttgctggctatgggggattactttcaccgtcttcgcacttgtagttctttg |
25348875 |
T |
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| Q |
218 |
tggacttctcgttcatgtgattctttctacactactcaacactcaacttaggacatctttcgctcttaaatagttttattttttatttgtttaagatata |
317 |
Q |
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| T |
25348874 |
tggacttctcgttcatgtgattccttctacactactcaacaatcaacttaggacatctttcgctcttaaatagttttattttttatttgtttaagatata |
25348775 |
T |
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| Q |
318 |
aatatatattacatatgaacaagtaggtgtgttcacaggt |
357 |
Q |
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| T |
25348774 |
aatatatattacatatgaacaagtaggtgtgttcacaggt |
25348735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 25355016 - 25354843
Alignment:
| Q |
90 |
tacaggcagatcacctcaggcaacaaactctggtgtacatgtctcgtatcttgacaattgcgcaagctgctaaaggcttgctggctatgggggattactt |
189 |
Q |
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|||||||||||||||| ||||||||||||||| | |||||||| || ||||| | |||| ||||||||| |||||||||||||||||||||| ||||| |
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| T |
25355016 |
tacaggcagatcaccttaggcaacaaactctgttatacatgtcacgcatcttatcgattggtcaagctgctcaaggcttgctggctatgggggaatactt |
25354917 |
T |
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| Q |
190 |
tcaccgtcttcgcacttgtagttctttgtggacttctcgttcatgtgattctttctacactactcaacactcaa |
263 |
Q |
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| T |
25354916 |
tcatcgtcttcgcactcttagttcattgtggactgctcgttcatgtcatcatttctaccctactcaacactcaa |
25354843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 25347472 - 25347353
Alignment:
| Q |
74 |
aatgttttcctttctctacaggcagatcacctcaggcaacaaactctggtgtacatgtctcgtatcttgacaattgcgcaagctgctaaaggcttgctgg |
173 |
Q |
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||||| || ||||||||||||||||||||||| |||||| ||||||||||| | ||||||| ||| | |||||| |||||| ||| |||| || ||| |
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| T |
25347472 |
aatgtctttctttctctacaggcagatcaccttaggcaagaaactctggtgcagatgtctcacatcctaacaattaggcaagcagctcaaggttttttgg |
25347373 |
T |
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| Q |
174 |
ctatgggggattactttcac |
193 |
Q |
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||||||||| ||||||||| |
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| T |
25347372 |
ctatggggggatactttcac |
25347353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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