View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15659_low_3 (Length: 717)
Name: NF15659_low_3
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 63 - 492
Target Start/End: Complemental strand, 40898010 - 40897586
Alignment:
| Q |
63 |
ggtgtatgttttggctgtacgaagcaatggatttgatgcgagttataagaaaatgagattggctctattgagtgtaatgttggtggtgatacttgttgct |
162 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
40898010 |
ggtgaatgttttggctgtaccaagaaatggatttgatgtgagttacaagaaaatgggattggctctattgaatgtaatgttagtaatgatacttgttgct |
40897911 |
T |
|
| Q |
163 |
gtcttaggttttctatttatagatggtagagccataaggagagaaatgcatctgtgtgcctcactcatcaaacaaaaagaggccactcaccaagttgaga |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
40897910 |
gtcttaggttttctatttatagatggtagagccataaggagagaaatgcatttgtgtgcctcacttatcaaacaaaaagaggccactcaccaagctgaga |
40897811 |
T |
|
| Q |
263 |
ggaaaaaatatgaacaagagcctcgtcgttgctagcgccagccacgacgtttgcacttctcttgcaggcattactgctctcataaaaatttcatcgaagt |
362 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| ||||| || ||| |||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40897810 |
g-aaaaaatatgaacaagagcctcgccgttgctagcgctagccatgatgttcgcacttctctcgcaggcattactgctctcataaaaatttcatctaagt |
40897712 |
T |
|
| Q |
363 |
tagttagttccctctggttcagaactggcttccaatttaattcaaatggaggatcgtacacaagacttactgggtaacaacatcattggttaattttata |
462 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
40897711 |
tagtt----ccacctggttcagaattggcttccaatttaatccaaatggaggattgtacacaagacttactaggtaacaacatcattggttcattttatg |
40897616 |
T |
|
| Q |
463 |
ctgcccaatttttatgattgtacttgttat |
492 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| |
|
|
| T |
40897615 |
ctgcacaatttttctgattgtacttattat |
40897586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 512 - 699
Target Start/End: Complemental strand, 40895777 - 40895590
Alignment:
| Q |
512 |
ctaaaaaggaatgatcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatgtactatggttaggtttcttcaccttttctttt |
611 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||| ||||||| |
|
|
| T |
40895777 |
ctaaaaagagatgatcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatggactatggtttgatttcttctcctcttctttt |
40895678 |
T |
|
| Q |
612 |
gttagctttatcaaacttaggaaataattgatttttcatcgttagaacaatatgtgctttaattttatataatgaatgaattcaacag |
699 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
40895677 |
gttatcttcatcaaacttaggaaataattgatttttcattgttagaacaatatatgctttcattttatatgatgaacgaattcaacag |
40895590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 568
Target Start/End: Complemental strand, 39028646 - 39028606
Alignment:
| Q |
528 |
ctaatcctccttatgattacatcttaatggattgccaggta |
568 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
39028646 |
ctaatcctccttatgattatatcttaatggattgtcaggta |
39028606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 526 - 699
Target Start/End: Complemental strand, 6996069 - 6995896
Alignment:
| Q |
526 |
tcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatgtactatggttaggtttcttcaccttttcttttgttagctttatcaa |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6996069 |
tcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatgtactatggttaggtttcttctccttttcttttgttagctttatcaa |
6995970 |
T |
|
| Q |
626 |
acttaggaaataattgatttttcatcgttagaacaatatgtgctttaattttatataatgaatgaattcaacag |
699 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6995969 |
acttaggaaatgattgatttttcatcgttagaacaatatgtgctttaattttatatgatgaatgaattcaacag |
6995896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University