View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_30 (Length: 356)
Name: NF15659_low_30
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 22 - 356
Target Start/End: Complemental strand, 31757168 - 31756838
Alignment:
| Q |
22 |
taatacactaacctttcaacttcttcaattctatactatactattctttccctcaaatgaagctcaaatccacctttcaatgaagaatctcatcacccat |
121 |
Q |
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| T |
31757168 |
taatacactaacctttcaacttcttcaattc----ctatactattctttccctcaaatgaagctcaaatccacctttcaatgaagaatctcatcacccac |
31757073 |
T |
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| Q |
122 |
ctcatcgtcgtcaccgccataattatattctatctttcaccctctgcccatactttaggctccggcactaccctctctgtcacagactccccttccaccg |
221 |
Q |
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| T |
31757072 |
ctcatcttcgtcaccgccataatcatattctatctttcaccctctgcccatactttaggctccggcactaccctctctgtcacagactcccctgccaccg |
31756973 |
T |
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| Q |
222 |
tatgtgggatcatgtcaggcgaaacaacacagcacattcagtgttaccgtgaaggagaagttttcaacatccttccaaacgtttcattttcttcaatctc |
321 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31756972 |
tatgcgggatcatatcaggcgaaacaacacagcacattcagtgttaccgtgaaggagaagttttcaacatccttccaaacgtttcattttcttcaatctc |
31756873 |
T |
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| Q |
322 |
tggtggaagaagctacttctgtggcttaaggtctg |
356 |
Q |
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| T |
31756872 |
tggtggaagaagctacttctgtggcttaaggtctg |
31756838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 35560149 - 35560109
Alignment:
| Q |
305 |
tcattttcttcaatctctggtggaagaagctacttctgtgg |
345 |
Q |
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| T |
35560149 |
tcattctcttcaatctcaggtggaagaaactacttctgtgg |
35560109 |
T |
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