View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_low_32 (Length: 348)

Name: NF15659_low_32
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_low_32
NF15659_low_32
[»] chr4 (16 HSPs)
chr4 (1-331)||(18782551-18782881)
chr4 (67-138)||(2996594-2996665)
chr4 (85-138)||(19395049-19395102)
chr4 (46-143)||(23459628-23459725)
chr4 (46-138)||(50800008-50800099)
chr4 (67-138)||(55064856-55064928)
chr4 (71-138)||(27123330-27123397)
chr4 (67-138)||(28300277-28300348)
chr4 (67-129)||(55414406-55414469)
chr4 (46-138)||(1706622-1706715)
chr4 (85-138)||(22662225-22662278)
chr4 (85-133)||(1965980-1966028)
chr4 (67-138)||(17822842-17822914)
chr4 (79-123)||(27124137-27124181)
chr4 (67-138)||(45214391-45214463)
chr4 (67-111)||(52259652-52259696)
[»] chr6 (14 HSPs)
chr6 (68-138)||(20368158-20368228)
chr6 (67-137)||(31624111-31624181)
chr6 (66-138)||(2455279-2455352)
chr6 (82-137)||(1575931-1575986)
chr6 (82-138)||(33832251-33832307)
chr6 (108-163)||(2263254-2263309)
chr6 (71-138)||(2460129-2460196)
chr6 (70-143)||(9912163-9912237)
chr6 (83-136)||(769175-769228)
chr6 (77-122)||(17770448-17770493)
chr6 (79-123)||(2460936-2460980)
chr6 (71-123)||(7148691-7148743)
chr6 (85-133)||(7931709-7931757)
chr6 (108-192)||(26559163-26559247)
[»] chr5 (6 HSPs)
chr5 (67-137)||(7674669-7674739)
chr5 (67-138)||(39105485-39105557)
chr5 (71-138)||(10125696-10125763)
chr5 (70-138)||(16457956-16458025)
chr5 (82-123)||(12467169-12467210)
chr5 (78-123)||(25705652-25705697)
[»] chr2 (16 HSPs)
chr2 (46-132)||(680503-680589)
chr2 (45-138)||(16451117-16451211)
chr2 (70-143)||(24347746-24347819)
chr2 (67-122)||(1893275-1893330)
chr2 (46-104)||(12464485-12464543)
chr2 (70-138)||(43279506-43279575)
chr2 (70-105)||(12194976-12195011)
chr2 (70-192)||(26202052-26202174)
chr2 (47-105)||(16398115-16398173)
chr2 (46-135)||(18066128-18066218)
chr2 (65-138)||(13220453-13220525)
chr2 (85-138)||(43530089-43530142)
chr2 (73-133)||(10285887-10285947)
chr2 (67-135)||(33941930-33941998)
chr2 (67-123)||(34652029-34652085)
chr2 (66-138)||(35378510-35378582)
[»] chr1 (23 HSPs)
chr1 (68-132)||(24915034-24915099)
chr1 (70-133)||(6262044-6262107)
chr1 (69-138)||(4445731-4445800)
chr1 (46-120)||(6292493-6292567)
chr1 (69-138)||(2777915-2777984)
chr1 (46-138)||(29635347-29635439)
chr1 (67-138)||(37473424-37473496)
chr1 (46-105)||(2294911-2294970)
chr1 (46-137)||(7136977-7137068)
chr1 (85-136)||(35925729-35925780)
chr1 (73-138)||(2295123-2295189)
chr1 (72-137)||(3887610-3887676)
chr1 (72-137)||(7941632-7941698)
chr1 (45-119)||(23895328-23895402)
chr1 (1-138)||(44031977-44032115)
chr1 (70-119)||(10799486-10799535)
chr1 (70-123)||(10809369-10809422)
chr1 (85-138)||(37811891-37811944)
chr1 (67-120)||(41195189-41195242)
chr1 (82-138)||(4481966-4482022)
chr1 (70-98)||(5709651-5709679)
chr1 (74-138)||(10280677-10280741)
chr1 (67-138)||(15942725-15942797)
[»] chr8 (8 HSPs)
chr8 (67-143)||(43504772-43504848)
chr8 (82-133)||(43368683-43368734)
chr8 (67-128)||(21653102-21653163)
chr8 (1-98)||(9956832-9956928)
chr8 (70-135)||(10358602-10358667)
chr8 (73-138)||(26473730-26473795)
chr8 (67-120)||(42597459-42597512)
chr8 (111-167)||(45098922-45098978)
[»] chr7 (12 HSPs)
chr7 (67-135)||(25670567-25670635)
chr7 (82-137)||(15740390-15740445)
chr7 (46-138)||(33678780-33678873)
chr7 (82-186)||(30535599-30535703)
chr7 (67-137)||(34035938-34036009)
chr7 (67-98)||(47130803-47130834)
chr7 (70-138)||(420384-420453)
chr7 (70-138)||(11619135-11619204)
chr7 (56-105)||(39279972-39280021)
chr7 (77-137)||(11048058-11048118)
chr7 (84-120)||(29768635-29768671)
chr7 (66-98)||(47303425-47303457)
[»] chr3 (21 HSPs)
chr3 (77-135)||(5391910-5391968)
chr3 (46-120)||(52440658-52440732)
chr3 (85-138)||(29427623-29427676)
chr3 (70-138)||(39980753-39980822)
chr3 (71-123)||(3044252-3044304)
chr3 (47-98)||(7301339-7301391)
chr3 (67-138)||(21367688-21367760)
chr3 (67-119)||(52619024-52619076)
chr3 (89-132)||(2175833-2175876)
chr3 (71-122)||(25925767-25925818)
chr3 (70-105)||(35696262-35696297)
chr3 (67-138)||(37273155-37273226)
chr3 (95-185)||(2304202-2304292)
chr3 (68-138)||(28240340-28240410)
chr3 (67-137)||(45541592-45541662)
chr3 (67-138)||(42747759-42747832)
chr3 (67-138)||(402519-402591)
chr3 (67-119)||(3845559-3845611)
chr3 (67-138)||(24085315-24085387)
chr3 (84-120)||(48300478-48300514)
chr3 (85-133)||(50004691-50004739)
[»] scaffold0221 (1 HSPs)
scaffold0221 (76-120)||(2796-2840)
[»] scaffold0608 (1 HSPs)
scaffold0608 (82-138)||(9615-9671)
[»] scaffold0147 (1 HSPs)
scaffold0147 (70-98)||(23655-23683)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 18782881 - 18782551
Alignment:
Q  1 ttctataacaaaggataaaataaacttgtattgttttccataggatataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18782881 ttctataacaaaggataaaataaacttgtattgttttccataggatataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaata 18782782  T
Q  101 gcttaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataagttaatccgaaaagac 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18782781 gctgaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataagttaatccgaaaagac 18782682  T
Q  201 catattaccaacaccaaacacactaccaccaacactaatacgcagttatttaaaattattaaatgtaaggtgtttaatgttgatccgtgacacatgaccg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18782681 catattaccaacaccaaacacactaccaccaacactaatacgcagttatttaaaattattaaatgtaaggtgtttaatgttgatccgtgacacatgaccg 18782582  T
Q  301 ataacacacactttcaatcagaggtgttcgt 331  Q
    |||||||||||||||||||||||||||||||    
T  18782581 ataacacacactttcaatcagaggtgttcgt 18782551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 2996594 - 2996665
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||| | | ||||||||||||||||| ||||||   ||||||||||||||| ||||||||| ||||    
T  2996594 atcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctc 2996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 19395102 - 19395049
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||| ||||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  19395102 aaataagctgaaaatagcttataaacatgtcgtaagttgtttttataagttctc 19395049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 23459628 - 23459725
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaa 143  Q
    |||||||| ||||| |||   |||||| | ||||| |||| |||||||||||||| ||||  ||||||||||||| |  |||||||||||||| ||||    
T  23459628 tataagctgttttcataagagatcttgaaaaacttatgaatataagttgaaaataacttattaacatgtcataagcttttttcataagttctccgaaa 23459725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 50800099 - 50800008
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||| |||||||||   ||| |||||||||| || ||||||| |||||| |||||| | ||||||||||||||| || ||| |||||||    
T  50800099 tataagctgttttcttaagctatcatggagaactt-tggaaataagctgaaaacagcttatagacatgtcataagttgtttacattagttctc 50800008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 55064856 - 55064928
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagct-taaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| |||||||||| |||||| |||| |  ||| ||||||||||||| ||||| ||||||||    
T  55064856 atcttggagaacttatgaaaataagatgaaaaaagctattgaaaaatgtcataagttgttttcaaaagttctc 55064928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 27123397 - 27123330
Alignment:
Q  71 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||| ||| || |||||||||||||| | |||||| ||||||||||||||| || |||||| ||||    
T  27123397 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctc 27123330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 28300348 - 28300277
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||| ||| ||| ||||||||||||||||| | ||||| ||||||||||| | || |||||||| |||||    
T  28300348 atcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataaattctc 28300277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 55414469 - 55414406
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttca 129  Q
    |||||||||||||| ||||||||||||||||| ||||||  ||| |||||||||| || |||||    
T  55414469 atcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgttttca 55414406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 1706622 - 1706715
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 138  Q
    |||||||| ||||| ||||  |||||||| | ||| ||||||||||||| ||||||||||  ||| ||| |||||| || |||||||| |||||    
T  1706622 tataagctgttttcataaactatcttggacagcttatgaaaataagttggaaatagcttatgaacaatgccataagctgttttcataatttctc 1706715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 22662278 - 22662225
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||| |||||||||||||  ||||| |||||||||  ||||||||||||||    
T  22662278 aaataagctgaaaatagcttatgaacatatcataagtttttttcataagttctc 22662225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 1965980 - 1966028
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 133  Q
    ||||||||| |||| ||||||  |||||||||||||||| |||||||||    
T  1965980 aaataagttaaaaacagcttatgaacatgtcataagttgttttcataag 1966028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 17822914 - 17822842
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| |||||||||| | |||| ||||||  ||| |||||||||| || ||||||| ||||||    
T  17822914 atcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcatatgttctc 17822842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 27124181 - 27124137
Alignment:
Q  79 ttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    |||||||||||| |||||||||||||| | |||||| ||||||||    
T  27124181 ttgtgaaaataaattgaaaatagcttatagacatgtaataagttg 27124137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 45214391 - 45214463
Alignment:
Q  67 atcttggagaacttg-tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||||||||  | |||||||| ||||||||| ||   ||| |||||||||||| ||||||||||||||    
T  45214391 atcttggagaacttaataaaaataagctgaaaatagattgtgaacgtgtcataagttgatttcataagttctc 45214463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 52259652 - 52259696
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaaca 111  Q
    |||| ||||| ||| |||||||||||||||||||||||| |||||    
T  52259652 atctgggagagcttatgaaaataagttgaaaatagcttataaaca 52259696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 20368228 - 20368158
Alignment:
Q  68 tcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||||||| |||||||||||||||| |||||||  |||||||||||||||| ||||||||||||||    
T  20368228 tcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttctc 20368158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 31624111 - 31624181
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 137  Q
    ||||||||||| || ||||||||||||||||| ||||||  ||||||||||||| || |||||||||||||    
T  31624111 atcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttct 31624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 2455279 - 2455352
Alignment:
Q  66 aatcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 138  Q
    |||||||||||| ||||||||||||| |||||| | |||| |||| |||| |||||||| ||||||||||||||    
T  2455279 aatcttggagaagttgtgaaaataagctgaaaacaacttataaacaatgtaataagttgttttcataagttctc 2455352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 1575931 - 1575986
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 137  Q
    |||||||||||| |||| ||||||  |||||||||||||||| |||||||||||||    
T  1575931 tgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 1575986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 33832307 - 33832251
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||| | |||| | |||| ||||||||||||||||| ||||||||||||||    
T  33832307 tgaaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttctc 33832251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 2263254 - 2263309
Alignment:
Q  108 aacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatg 163  Q
    ||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||||||    
T  2263254 aacatgtcatatgttgttttcataagttctctcaaacagtttcttaagtgtttatg 2263309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 2460196 - 2460129
Alignment:
Q  71 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||| ||| || |||||||||||||| | |||||| ||||||||||||||| || |||||| ||||    
T  2460196 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctc 2460129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 9912237 - 9912163
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagcttaaaaaca-tgtcataagttgctttcataagttctcggaaa 143  Q
    ||||||||||| |||||||||| | |||| ||||||  |||| ||||||||| || |||||||||||||| ||||    
T  9912237 ttggagaacttatgaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataagttctccgaaa 9912163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 769175 - 769228
Alignment:
Q  83 gaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttc 136  Q
    |||| ||||||||||| ||||||  ||||||||||||| || ||||||||||||    
T  769175 gaaagtaagttgaaaacagcttatgaacatgtcataagatgttttcataagttc 769228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 17770493 - 17770448
Alignment:
Q  77 acttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 122  Q
    |||| |||||||||||||||||||| |||  |||||||||||||||    
T  17770493 acttatgaaaataagttgaaaatagtttatgaacatgtcataagtt 17770448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 2460980 - 2460936
Alignment:
Q  79 ttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    |||||||||||| |||||||||||||| | |||||| ||||||||    
T  2460980 ttgtgaaaataaattgaaaatagcttatagacatgtaataagttg 2460936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 7148691 - 7148743
Alignment:
Q  71 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    |||||| ||| ||||||||||||||||||||||||   ||| |||||||||||    
T  7148691 tggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagttg 7148743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 7931757 - 7931709
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 133  Q
    ||||||| |||||| | ||||| |||||||||||||||| |||||||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataag 7931709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 26559247 - 26559163
Alignment:
Q  108 aacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataagttaatcc 192  Q
    ||||| |||||||||| |||||||||||||   ||| ||| ||  ||||| ||||||||| |  |||| ||||||||||||||||    
T  26559247 aacatatcataagttgttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatcc 26559163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 7674669 - 7674739
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 137  Q
    ||||||||||| ||||||||||||| |||||| | |||| ||||||||||||||||| || ||||||||||    
T  7674669 atcttggagaatttgtgaaaataagctgaaaacaccttataaacatgtcataagttgtttccataagttct 7674739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 39105485 - 39105557
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| |||||||||| | |||||||||||  ||| |||||||||| || |||||||| |||||    
T  39105485 atcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataagctgttttcataaattctc 39105557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 10125763 - 10125696
Alignment:
Q  71 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||| ||| |||||||||| |||||| | ||||  |||||||||||||||| || |||||||||||    
T  10125763 tggagagcttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctc 10125696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 16458025 - 16457956
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagctta--aaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||||||||||  |||||| ||||||  ||||| ||||||||| || ||||||||||||||    
T  16458025 ttggagaacttgtgaaaataaactgaaaagagcttatgaaaac-tgtcataagctgttttcataagttctc 16457956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 12467169 - 12467210
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    |||||||||| |||||| |||||| |||||||||||||||||    
T  12467169 tgaaaataagctgaaaacagcttataaacatgtcataagttg 12467210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 25705697 - 25705652
Alignment:
Q  78 cttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    ||||||||||||||||||||| |||||| | |||||||| ||||||    
T  25705697 cttgtgaaaataagttgaaaacagcttatagacatgtcacaagttg 25705652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 680503 - 680589
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataa 132  Q
    |||||||||||||| |||   |||||| |||||||||||||||||| |||||| || ||| |||||||||||||| || ||||||||    
T  680503 tataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagctgttttcataa 680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 16451117 - 16451211
Alignment:
Q  45 atataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 138  Q
    ||||||||| ||||| |||   ||||||||||||| ||||||||||| |||||| |||| |  ||| ||||||||||||| ||||||||||||||    
T  16451117 atataagctgttttcgtaagctatcttggagaactcgtgaaaataagctgaaaacagctcatgaacaatgtcataagttgttttcataagttctc 16451211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 24347746 - 24347819
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaa 143  Q
    ||||||||||| |||||||||| |||| || |||||  ||| | ||||||||||||||||||||||||| ||||    
T  24347746 ttggagaacttatgaaaataagctgaatatggcttatgaacctatcataagttgctttcataagttctctgaaa 24347819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 1893330 - 1893275
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 122  Q
    ||||||||||||||||||||||||| |||||||| ||||   ||||||||||||||    
T  1893330 atcttggagaacttgtgaaaataagctgaaaataacttatgtacatgtcataagtt 1893275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 12464543 - 12464485
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagctt 104  Q
    |||||||||||||| |||   ||||||||||||||||||||||||| |||||| |||||    
T  12464543 tataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaaagctt 12464485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 43279575 - 43279506
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||||||||||||||||||||||| ||||||  |||  ||||||||| || |||||||| |||||    
T  43279575 ttggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcataaattctc 43279506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 12194976 - 12195011
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagctta 105  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12194976 ttggagaacttgtgaaaataagttgaaaaaagctta 12195011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 26202052 - 26202174
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagc 168  Q
    ||||||||||| ||||||||||||||||| ||||||  |||  |||||||||||| | |||||| |||| | ||||| | ||  |||   ||||| ||||    
T  26202052 ttggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttctcataaattctagcaaagaatctcacaaa-acttatgtcagc 26202150  T
Q  169 acataaattcaaataagttaatcc 192  Q
    | |||| |||||||||||||||||    
T  26202151 agataagttcaaataagttaatcc 26202174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 16398115 - 16398173
Alignment:
Q  47 ataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagctta 105  Q
    ||||||||||||| ||| | || ||||||||||| |||||||||| |||||| ||||||    
T  16398115 ataagctattttcataagttatgttggagaacttatgaaaataagctgaaaacagctta 16398173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 18066128 - 18066218
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagtt 135  Q
    |||||||| ||||| |||   ||||||||||||||  ||||||||| |||||||||||||  | | |||||||||| || |||||||||||    
T  18066128 tataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtcataagctgttttcataagtt 18066218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 13220453 - 13220525
Alignment:
Q  65 taatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||| |||||| || ||||||||| |||| ||||||  |||| ||||||||||| ||| ||||||||||    
T  13220453 taatcttgg-gaacttatgcaaataagtttaaaacagcttatgaacaagtcataagttgtttttataagttctc 13220525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 43530142 - 43530089
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||||||||||||||   ||||||||||||  || ||||||||||||||    
T  43530142 aaataagttgaaaatagcttgtgaacatgtcataatctgttttcataagttctc 43530089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 10285887 - 10285947
Alignment:
Q  73 gagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 133  Q
    |||||||| || |||||||||||||| ||||||   ||||||||||||||  |||||||||    
T  10285887 gagaacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataag 10285947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 33941930 - 33941998
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 135  Q
    ||||||||||  || ||| ||||||||||||  ||||||  ||| |||||||||||| |||||||||||    
T  33941930 atcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataagtt 33941998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 34652085 - 34652029
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    |||||||||| ||| || |||||||||||||| ||||||   |||||||||||||||    
T  34652085 atcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttg 34652029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 35378582 - 35378510
Alignment:
Q  66 aatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||| | ||| |||||||||| |||||||| ||||  |||| ||||| || || ||||||||||||||    
T  35378582 aatcttggatagcttatgaaaataagctgaaaataacttatgaacaagtcatcagctgttttcataagttctc 35378510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 24915099 - 24915034
Alignment:
Q  68 tcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataa 132  Q
    ||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||| ||||||||    
T  24915099 tcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtcataagttgttttcataa 24915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 6262044 - 6262107
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 133  Q
    ||||||| |||||| |||||||||||||||||||||  |||||||||||||||| | |||||||    
T  6262044 ttggagagcttgtggaaataagttgaaaatagcttatgaacatgtcataagttgttctcataag 6262107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 4445731 - 4445800
Alignment:
Q  69 cttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||| ||||||||||||||||||||| |||||   ||||||| ||||| ||||||||||| |||||    
T  4445731 cttggagagcttgtgaaaataagttgaaaacagcttctgaacatgttataagctgctttcataaattctc 4445800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 6292493 - 6292567
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 120  Q
    |||||||||||||| ||||  || ||||||| ||| |||||||||| |||||| ||||||  |||||||||||||    
T  6292493 tataagctattttcgtaaactattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 6292567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 2777915 - 2777984
Alignment:
Q  69 cttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||| |||||||||| ||||||  |||||  || | ||||||||||| ||||||||||||||    
T  2777915 cttggagaacttatgaaaataagctgaaaacggcttatgaatacgtcataagttggtttcataagttctc 2777984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 29635347 - 29635439
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||| |||||||  |||| ||||| ||  | ||||||||||||| |||||| | |||| ||||||||||||| ||| |||||||| |||||    
T  29635347 tataagttattttcagaaattatcttagaagatttgtgaaaataagctgaaaacaacttataaacatgtcataacttgttttcataaattctc 29635439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 37473424 - 37473496
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| |||||||||| || ||| ||||||  ||| ||||||||||||| ||||| ||||||||    
T  37473424 atcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctc 37473496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 2294911 - 2294970
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagctta 105  Q
    |||||||||||||| ||||  ||||||||||||||  ||||||||| |||||| ||||||    
T  2294911 tataagctattttcataaactatcttggagaacttacgaaaataaggtgaaaacagctta 2294970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 7137068 - 7136977
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 137  Q
    |||||||| ||||| |||   |||||||||||||| |||||||||| |||||||| ||||  || ||||||||||    |||||||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttcataagttct 7136977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 35925729 - 35925780
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttc 136  Q
    |||||||||||||| ||||||  ||||||||||||| || ||||||||||||    
T  35925729 aaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttc 35925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 2295123 - 2295189
Alignment:
Q  73 gagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||||||||||||| | ||||||  |||  ||||||||| || ||||||||||||||    
T  2295123 gagaacttgtgaaaataagttgaatagagcttatgaaaattgtcataagctgttttcataagttctc 2295189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 3887676 - 3887610
Alignment:
Q  72 ggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttct 137  Q
    ||||||||| |||||||||||| |||| ||||||  ||| |||||||||| || |||||||||||||    
T  3887676 ggagaacttatgaaaataagttaaaaacagcttatgaacaatgtcataagatgttttcataagttct 3887610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 7941632 - 7941698
Alignment:
Q  72 ggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttct 137  Q
    ||||||||| |||||||||||||||||||||||   ||| |||||||||| || |||||||| ||||    
T  7941632 ggagaacttatgaaaataagttgaaaatagcttcggaacaatgtcataagctgttttcataaattct 7941698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 23895328 - 23895402
Alignment:
Q  45 atataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 119  Q
    ||||| ||||||||  ||||  |||||||||| |||||| ||||||||| |||||||||||  |||||| |||||    
T  23895328 atatatgctatttttataaactatcttggagagcttgtggaaataagttaaaaatagcttacgaacatgccataa 23895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44032115 - 44031977
Alignment:
Q  1 ttctataacaaaggataaaataaacttgtattgttttcc-ataggatataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaat 99  Q
    |||||||||||| | ||||||||| |   |||||||||  ||| | ||||| |||||||||||| | |||||| ||| ||| || |||| || |||||||    
T  44032115 ttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttcttaagttatcttgaagagcttatggaaattagctgaaaat 44032016  T
Q  100 agcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||   ||||||||| || ||||| |||||| ||||    
T  44032015 agcttatggacatgtcattagctgcttacataagctctc 44031977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 10799486 - 10799535
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 119  Q
    ||||||||||| |||||||||| |||||| || ||| |||||||||||||    
T  10799486 ttggagaacttatgaaaataagctgaaaacagattataaacatgtcataa 10799535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 10809369 - 10809422
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    ||||||||||| |||||||||| |||||| |  ||| |||||||||||||||||    
T  10809369 ttggagaacttatgaaaataagctgaaaacatattataaacatgtcataagttg 10809422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 37811891 - 37811944
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| || |||  ||||||||||||| || ||||||||||||||    
T  37811891 aaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctc 37811944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 41195242 - 41195189
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 120  Q
    |||||||||||||| |||||||||| |||||| ||||||  || ||||||||||    
T  41195242 atcttggagaacttatgaaaataagctgaaaaaagcttattaaaatgtcataag 41195189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 4481966 - 4482022
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||| | |||| ||||||  ||||||| |||||||| ||||||||||||||    
T  4481966 tgaaaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctc 4482022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 5709651 - 5709679
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaa 98  Q
    |||||||||||||||||||||||||||||    
T  5709651 ttggagaacttgtgaaaataagttgaaaa 5709679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 10280677 - 10280741
Alignment:
Q  74 agaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||| |||||||||| ||| || ||||||  ||||||  |||||||| ||||||||||||||    
T  10280677 agaacttatgaaaataagctgacaaaagcttatgaacatgaaataagttgttttcataagttctc 10280741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 15942797 - 15942725
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaata-gcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| |  ||||||| |||||| | |||||  |||||||||||||||| |||||||| |||||    
T  15942797 atcttggagaacttattgaaataagctgaaaacatgcttatgaacatgtcataagttgttttcataaattctc 15942725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 43504772 - 43504848
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaa 143  Q
    |||||||||||||| || ||||||| |||||| |||||| ||||| ||| ||||||| |||||| ||||||| ||||    
T  43504772 atcttggagaacttatggaaataagctgaaaacagcttataaacaagtcgtaagttgttttcatcagttctccgaaa 43504848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 43368734 - 43368683
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 133  Q
    |||||||||||||||||||||| |  |||||||||||||||| |||||||||    
T  43368734 tgaaaataagttgaaaatagctaatgaacatgtcataagttgttttcataag 43368683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 21653102 - 21653163
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttc 128  Q
    |||||||||| ||| |||||||||| |||||||||||||  ||| |||||||||||| ||||    
T  21653102 atcttggagagcttatgaaaataagctgaaaatagcttatgaacgtgtcataagttgatttc 21653163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9956928 - 9956832
Alignment:
Q  1 ttctataacaaaggataaaataaacttgtattgttttccataggatataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaa 98  Q
    |||||||||||| ||||||||||| || |||| ||| | ||| | |||||| | ||||| |||   |||||||||||||| |||||||||| ||||||    
T  9956928 ttctataacaaaagataaaataaagttttatt-tttcctataagttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 10358602 - 10358667
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 135  Q
    ||||||||||||||||||||| | |||||   ||||  |||||||||||||||  |||||||||||    
T  10358602 ttggagaacttgtgaaaataaatcgaaaacgacttatgaacatgtcataagttattttcataagtt 10358667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 26473795 - 26473730
Alignment:
Q  73 gagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||| ||| |||||||||||| ||| ||||||| | |||||||||||| || ||||||||| ||||    
T  26473795 gagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctctc 26473730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 42597459 - 42597512
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 120  Q
    |||||||| ||||| || |||||||||||||| |||||| | ||||||||||||    
T  42597459 atcttggataacttatggaaataagttgaaaacagcttatagacatgtcataag 42597512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 45098978 - 45098922
Alignment:
Q  111 atgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccag 167  Q
    ||||||||||||| ||||||| ||||||||||| | | ||| || ||||||||||||    
T  45098978 atgtcataagttgttttcataggttctcggaaacaatctctcaagtgtttatgccag 45098922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 25670635 - 25670567
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 135  Q
    |||||||||| |||||||||||||| |||||| |  |||  |||||||||||||||| |||||||||||    
T  25670635 atcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcataagtt 25670567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 15740445 - 15740390
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 137  Q
    |||||||||||| |||| ||||||  |||||||||||||||| |||||||||||||    
T  15740445 tgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 15740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 33678780 - 33678873
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 138  Q
    |||||||| ||||| |||   |||||||| ||||||||||||||||||||||| | || |  ||| |||| |||||||| ||||||||||||||    
T  33678780 tataagctgttttcataagctatcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttataagttgttttcataagttctc 33678873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 30535599 - 30535703
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaa 181  Q
    |||||||||  |||||| ||||||  ||||| |||||||||| ||||||||||||||  ||| ||| ||| || |||||||| ||| | || || |||||    
T  30535599 tgaaaataacctgaaaacagcttacgaacatatcataagttgttttcataagttctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaa 30535698  T
Q  182 taagt 186  Q
    |||||    
T  30535699 taagt 30535703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 34035938 - 34036009
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttct 137  Q
    ||||| ||||||||| |||||||||||||||| | ||||  ||| ||||||||||||  |||||||||||||    
T  34035938 atcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataagttct 34036009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 98
Target Start/End: Complemental strand, 47130834 - 47130803
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaa 98  Q
    ||||||||||||||||||||||||||||||||    
T  47130834 atcttggagaacttgtgaaaataagttgaaaa 47130803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 420384 - 420453
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagc-ttaaaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||||| |||||||||||||||||  || ||| |||  |||||||| ||| ||||||||||||||    
T  420384 ttggagaacttatgaaaataagttgaaaaaggctttagaaaactgtcataaattgttttcataagttctc 420453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 11619204 - 11619135
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||||| ||||| ||||||||||| ||||||  |||  |||||||||||| |||||||| |||||    
T  11619204 ttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagttgttttcataaattctc 11619135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 39279972 - 39280021
Alignment:
Q  56 tttcttaaataatcttggagaacttgtgaaaataagttgaaaatagctta 105  Q
    |||| ||||| |||||||||||||| |||||||||| |||||| ||||||    
T  39279972 tttcataaattatcttggagaacttttgaaaataagctgaaaaaagctta 39280021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 11048058 - 11048118
Alignment:
Q  77 acttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 137  Q
    |||| ||| |||||| |||||| ||||||  |||||||||||||||| ||| |||||||||    
T  11048058 acttatgagaataagctgaaaacagcttatgaacatgtcataagttgttttgataagttct 11048118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 29768671 - 29768635
Alignment:
Q  84 aaaataagttgaaaatagcttaaaaacatgtcataag 120  Q
    |||||||||||||||||||||| | ||||||||||||    
T  29768671 aaaataagttgaaaatagcttatagacatgtcataag 29768635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 47303425 - 47303457
Alignment:
Q  66 aatcttggagaacttgtgaaaataagttgaaaa 98  Q
    |||| ||||||||||||||||||||||||||||    
T  47303425 aatcctggagaacttgtgaaaataagttgaaaa 47303457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 5391910 - 5391968
Alignment:
Q  77 acttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 135  Q
    |||| ||||||||||||||||| ||||||  ||||||||||||| || |||||||||||    
T  5391910 acttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 52440732 - 52440658
Alignment:
Q  46 tataagctattttcttaaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 120  Q
    |||||||||||||| ||| | |||||| ||||||| ||||||| ||||||||| | ||||  |||||||||||||    
T  52440732 tataagctattttcataatttatcttgaagaacttatgaaaattagttgaaaacaacttatgaacatgtcataag 52440658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 29427676 - 29427623
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||||||||||  |||||||||| || || ||||||||||||||    
T  29427676 aaataagttgaaaatagcttatgaacatgtcattaggtgttttcataagttctc 29427623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 39980753 - 39980822
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 138  Q
    ||||||||||| ||||||||||||||||| ||||||  ||||  |||||||| || ||||||||||||||    
T  39980753 ttggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcataagctgttttcataagttctc 39980822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 3044304 - 3044252
Alignment:
Q  71 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 123  Q
    |||||| ||| ||||||||||||||||| ||||||  ||||||||||||||||    
T  3044304 tggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttg 3044252  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 7301339 - 7301391
Alignment:
Q  47 ataagctattttct-taaataatcttggagaacttgtgaaaataagttgaaaa 98  Q
    |||||||||||| | ||| | ||||||||||||||||||||||||||||||||    
T  7301339 ataagctattttttgtaatttatcttggagaacttgtgaaaataagttgaaaa 7301391  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 21367688 - 21367760
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| |||||||||| |||||| |||||   ||| |||||||||| || ||||||||||||||    
T  21367688 atcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttctc 21367760  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 52619024 - 52619076
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 119  Q
    |||||| ||| |||||||||||||| |||||||||||||  ||||||||||||    
T  52619024 atcttgaagagcttgtgaaaataaggtgaaaatagcttatgaacatgtcataa 52619076  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 2175876 - 2175833
Alignment:
Q  89 aagttgaaaatagcttaaaaacatgtcataagttgctttcataa 132  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||    
T  2175876 aagttgaaaacagcttacaaacatgtcataagttgttttcataa 2175833  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 25925767 - 25925818
Alignment:
Q  71 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 122  Q
    |||||| ||| ||||||||||||||||| ||||||  |||||||||||||||    
T  25925767 tggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagtt 25925818  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 35696262 - 35696297
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaatagctta 105  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35696262 ttggagaacttgtgaaaataagttgaaaaaagctta 35696297  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 37273155 - 37273226
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||||||| || |||||||||||||| | ||||   ||||||||||||||| || |||||| ||||    
T  37273155 atcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 2304292 - 2304202
Alignment:
Q  95 aaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataag 185  Q
    |||| ||||||  ||||||||||||||||||||||||| |||||  ||| ||||||  || ||||||||| || | || | ||||||||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatgctagtagatcagttcaaataag 2304202  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 28240340 - 28240410
Alignment:
Q  68 tcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||| ||||||||  ||||||||||||||||||||||  ||  |||||||||| || |||| |||||||||    
T  28240340 tcttcgagaacttaggaaaataagttgaaaatagctttgaacaatgtcataagctgttttcctaagttctc 28240410  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 45541592 - 45541662
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 137  Q
    |||||||| ||||| ||| |||||  |||||| ||||||  ||||||||||||| || |||||||||||||    
T  45541592 atcttggataacttatgagaataacctgaaaacagcttatgaacatgtcataagctgttttcataagttct 45541662  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 42747832 - 42747759
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaaca-tgtcataa-gttgctttcataagttctc 138  Q
    |||||||| ||||| ||||||||||  ||||| |||||| ||||| |||||||| |||| ||||||||||||||    
T  42747832 atcttggataacttctgaaaataaggagaaaacagcttataaacaatgtcataaagttgttttcataagttctc 42747759  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 402591 - 402519
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 138  Q
    |||||| ||||||||||||| |||| |||||| ||||||  ||| |||||||||| || ||||||| ||||||    
T  402591 atcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatgtcataagctgttttcatacgttctc 402519  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 3845611 - 3845559
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 119  Q
    |||||||||||||| |||||||||| |||||| || ||| ||| |||||||||    
T  3845611 atcttggagaacttatgaaaataagctgaaaaaagattataaaaatgtcataa 3845559  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 24085387 - 24085315
Alignment:
Q  67 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaaca-tgtcataagttgctttcataagttctc 138  Q
    ||||||||||||||||||||||||| |||||| ||| ||  |||| |  |||||| || ||||||||||||||    
T  24085387 atcttggagaacttgtgaaaataagctgaaaacagcgtatgaacagtaccataagctgttttcataagttctc 24085315  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 48300514 - 48300478
Alignment:
Q  84 aaaataagttgaaaatagcttaaaaacatgtcataag 120  Q
    |||||||||||||||||||||| | ||||||||||||    
T  48300514 aaaataagttgaaaatagcttatacacatgtcataag 48300478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 50004691 - 50004739
Alignment:
Q  85 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 133  Q
    ||||||| |||||| ||||||| |||||||||||||||| || ||||||    
T  50004691 aaataagctgaaaacagcttaagaacatgtcataagttgtttccataag 50004739  T

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Target: scaffold0221 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 2796 - 2840
Alignment:
Q  76 aacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 120  Q
    |||||||||||||||||||||||||||||   |||||||||||||    
T  2796 aacttgtgaaaataagttgaaaatagcttgtgaacatgtcataag 2840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 9671 - 9615
Alignment:
Q  82 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 138  Q
    |||||||||| | |||| ||||||  ||||||| |||||||| ||||||||||||||    
T  9671 tgaaaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctc 9615  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 23655 - 23683
Alignment:
Q  70 ttggagaacttgtgaaaataagttgaaaa 98  Q
    |||||||||||||||||||||||||||||    
T  23655 ttggagaacttgtgaaaataagttgaaaa 23683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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