View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_33 (Length: 343)
Name: NF15659_low_33
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 94 - 330
Target Start/End: Complemental strand, 34697623 - 34697387
Alignment:
| Q |
94 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34697623 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
34697524 |
T |
|
| Q |
194 |
gaaattaactgtcatcaaaggaaattctaaactccggattcccttgattgcaagtattctcaaaagtcttcgtccaccgggtggaatttatacccgttat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34697523 |
gaaattaactgtcatcaaaggaaattctaaactccggattcccttgattgcaagtattctcaaaagtcttcgtccaccgggtggaatttatacccgttat |
34697424 |
T |
|
| Q |
294 |
gaagtatttctctcacaaaattttaatagtcttttat |
330 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34697423 |
gaagtatttctctcacaaaattttaatagtcttttat |
34697387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 94 - 330
Target Start/End: Complemental strand, 34720035 - 34719799
Alignment:
| Q |
94 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34720035 |
atcaatacaataatgttattttgtttcaatctctatttatttagatgccatttatatttaaaaaggtaattaatacttttttgactcaataagaccagga |
34719936 |
T |
|
| Q |
194 |
gaaattaactgtcatcaaaggaaattctaaactccggattcccttgattgcaagtattctcaaaagtcttcgtccaccgggtggaatttatacccgttat |
293 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34719935 |
gaaattaactgtcatcaaaggaaattctaaactccggattcccttgattgcaagtattctcaaaagtcttcgtccaccgggtggaatttatacccgttat |
34719836 |
T |
|
| Q |
294 |
gaagtatttctctcacaaaattttaatagtcttttat |
330 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34719835 |
gaagtatttctctcacaaaattttaatagtcttttat |
34719799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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