View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_low_35 (Length: 338)

Name: NF15659_low_35
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_low_35
NF15659_low_35
[»] chr3 (7 HSPs)
chr3 (14-335)||(9996185-9996506)
chr3 (14-335)||(10217202-10217524)
chr3 (278-335)||(10227029-10227086)
chr3 (23-74)||(10220735-10220786)
chr3 (23-74)||(10226828-10226879)
chr3 (126-191)||(10377630-10377695)
chr3 (149-191)||(10658567-10658609)
[»] chr5 (9 HSPs)
chr5 (14-335)||(26796673-26796995)
chr5 (278-335)||(26800406-26800463)
chr5 (278-335)||(26807956-26808013)
chr5 (278-335)||(26815346-26815403)
chr5 (278-335)||(26822983-26823040)
chr5 (23-74)||(26800205-26800256)
chr5 (23-74)||(26807755-26807806)
chr5 (23-74)||(26815145-26815196)
chr5 (23-74)||(26822782-26822833)
[»] chr4 (1 HSPs)
chr4 (101-191)||(25793934-25794024)
[»] chr8 (1 HSPs)
chr8 (101-161)||(11488825-11488888)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 9996185 - 9996506
Alignment:
Q  14 aaagattacataaaggatcctctgtcatcatatccaaattttaaataatgatttatgcttatcctttaatgattttaactaatgatgtgatgaattgaaa 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996185 aaagattacataaaagatcctctgtcatcatatccaaattttaaataatgatttatgcttatcctttaatgattttaactaatgatgtgatgaattgaaa 9996284  T
Q  114 acaaaagtggaccatgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccacaagagaagacttaattagttact 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996285 acaaaagtggaccatgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccacaagagaagacttaattagttact 9996384  T
Q  214 cgatctgtatttgaagaaatgaaagttgttagccaaactgcaattggcactgatggttgaacctttcacatgtgagtctttgctctttactttcaaggaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996385 cgatctgtatttgaagaaatgaaagttgttagccaaactgcaattggcactgatggttgaacctttcacatgtgagtctttgctctttactttcaaggaa 9996484  T
Q  314 aattctatccttcaatcttcat 335  Q
    ||||||||||||||||||||||    
T  9996485 aattctatccttcaatcttcat 9996506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 10217202 - 10217524
Alignment:
Q  14 aaagattacataaaggatcctctgtcatcatatccaaattttaaataatgatttatgcttatcctttaatgattttaactaatgatgtgatgaattgaaa 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217202 aaagattacataaaagatcctctgtcatcatatccaaattttaaataatgatttatgcttatcctttaatgattttaactaatgatgtgatgaattgaaa 10217301  T
Q  114 acaaaagtggaccatgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccacaagagaagacttaattag-ttac 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  10217302 acaaaagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagaggaatgaaatggttgtcattgccacaagagaagacttacttagtttac 10217401  T
Q  213 tcgatctgtatttgaagaaatgaaagttgttagccaaactgcaattggcactgatggttgaacctttcacatgtgagtctttgctctttactttcaagga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217402 tcgatctgtatttgaagaaatgaaagttgttagccaaactgcaattggcactgatggttgaacctttcacatgtgagtctttgctctttactttcaagga 10217501  T
Q  313 aaattctatccttcaatcttcat 335  Q
    |||||||||||||||||||||||    
T  10217502 aaattctatccttcaatcttcat 10217524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 10227029 - 10227086
Alignment:
Q  278 ttcacatgtgagtctttgctctttactttcaaggaaaattctatccttcaatcttcat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10227029 ttcacatgtgagtctttgctctttactttcaaggaaaattctatcctttaatcttcat 10227086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 10220735 - 10220786
Alignment:
Q  23 ataaaggatcctctgtcatcatatccaaattttaaataatgatttatgctta 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10220735 ataaaagatcctctgtcatcatatccaaattttaaataatgatttatgctta 10220786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 10226828 - 10226879
Alignment:
Q  23 ataaaggatcctctgtcatcatatccaaattttaaataatgatttatgctta 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10226828 ataaaagatcctctgtcatcatatccaaattttaaataatgatttatgctta 10226879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 10377695 - 10377630
Alignment:
Q  126 catgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccaca 191  Q
    |||||||||||||||||||||| ||||||||| |||||||||||  ||| ||  ||||||||||||    
T  10377695 catgttattgtaatgattcttcttgtaaaaatatttgagaggagcaaaacggccgtcattgccaca 10377630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 10658567 - 10658609
Alignment:
Q  149 tgtaaaaatgtttgagaggagtgaaatggttgtcattgccaca 191  Q
    |||||||||||||||||||||  |||||||||||| |||||||    
T  10658567 tgtaaaaatgtttgagaggagcaaaatggttgtcactgccaca 10658609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 26796673 - 26796995
Alignment:
Q  14 aaagattacataaaggatcctctgtcatcatatccaaattttaaataatgatttatgcttatcctttaatgattttaactaatgatgtgatgaattgaaa 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796673 aaagattacataaaagatcctctgtcatcatatccaaattttaaataatgatttatgcttatcctttaatgattttaactaatgatgtgatgaattgaaa 26796772  T
Q  114 acaaaagtggaccatgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccacaagagaagacttaattag-ttac 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  26796773 acaaaagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagaggaatgaaatggttgtcattgccacaagagaagacttacttagtttac 26796872  T
Q  213 tcgatctgtatttgaagaaatgaaagttgttagccaaactgcaattggcactgatggttgaacctttcacatgtgagtctttgctctttactttcaagga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796873 tcgatctgtatttgaagaaatgaaagttgttagccaaactgcaattggcactgatggttgaacctttcacatgtgagtctttgctctttactttcaagga 26796972  T
Q  313 aaattctatccttcaatcttcat 335  Q
    |||||||||||||||||||||||    
T  26796973 aaattctatccttcaatcttcat 26796995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 26800406 - 26800463
Alignment:
Q  278 ttcacatgtgagtctttgctctttactttcaaggaaaattctatccttcaatcttcat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26800406 ttcacatgtgagtctttgctctttactttcaaggaaaattctatcctttaatcttcat 26800463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 26807956 - 26808013
Alignment:
Q  278 ttcacatgtgagtctttgctctttactttcaaggaaaattctatccttcaatcttcat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26807956 ttcacatgtgagtctttgctctttactttcaaggaaaattctatcctttaatcttcat 26808013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 26815346 - 26815403
Alignment:
Q  278 ttcacatgtgagtctttgctctttactttcaaggaaaattctatccttcaatcttcat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26815346 ttcacatgtgagtctttgctctttactttcaaggaaaattctatcctttaatcttcat 26815403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 26822983 - 26823040
Alignment:
Q  278 ttcacatgtgagtctttgctctttactttcaaggaaaattctatccttcaatcttcat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26822983 ttcacatgtgagtctttgctctttactttcaaggaaaattctatcctttaatcttcat 26823040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 26800205 - 26800256
Alignment:
Q  23 ataaaggatcctctgtcatcatatccaaattttaaataatgatttatgctta 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26800205 ataaaagatcctctgtcatcatatccaaattttaaataatgatttatgctta 26800256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 26807755 - 26807806
Alignment:
Q  23 ataaaggatcctctgtcatcatatccaaattttaaataatgatttatgctta 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26807755 ataaaagatcctctgtcatcatatccaaattttaaataatgatttatgctta 26807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 26815145 - 26815196
Alignment:
Q  23 ataaaggatcctctgtcatcatatccaaattttaaataatgatttatgctta 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26815145 ataaaagatcctctgtcatcatatccaaattttaaataatgatttatgctta 26815196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 26822782 - 26822833
Alignment:
Q  23 ataaaggatcctctgtcatcatatccaaattttaaataatgatttatgctta 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26822782 ataaaagatcctctgtcatcatatccaaattttaaataatgatttatgctta 26822833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 25793934 - 25794024
Alignment:
Q  101 tgatgaattgaaaacaaaagtggaccatgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccaca 191  Q
    ||||||| ||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||  || ||||||| |||||||||    
T  25793934 tgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtaattgccaca 25794024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 11488825 - 11488888
Alignment:
Q  101 tgatgaattgaaaacaaaagtggaccatgtta---ttgtaatgattcttcctgtaaaaatgttt 161  Q
    |||||||||||| ||||||||||| |||||||   || | |||||||||| |||||||||||||    
T  11488825 tgatgaattgaagacaaaagtggagcatgttatttttatcatgattcttcttgtaaaaatgttt 11488888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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