View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_38 (Length: 308)
Name: NF15659_low_38
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 32649527 - 32649258
Alignment:
| Q |
29 |
gcaataaacgacatacttactaataaaacaaagataatgaaaaatattcaaaatattcaaattaatcgtgtgacgtattgggg-tatttaccattagggg |
127 |
Q |
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| T |
32649527 |
gcaataaacgacatacttactaataaaacaaagataatgaaaaatattcaaaata---------atcgtgtcacgtattgggggtatttaccattagggg |
32649437 |
T |
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| Q |
128 |
agtaaaaaagcaaaccaaaaatttgatgagcatgaagttattgagtactccattaatagaaattataggagaaatccctcttttacttgtttagtggtat |
227 |
Q |
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| T |
32649436 |
agtaaaaaagcaaaccagaaatttgatgagcctgaagttattgagtactccattaatagaaatttcaggagaaatccctcttttacttgtttagtggtat |
32649337 |
T |
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| Q |
228 |
tatatggaaaatataattag------nnnnnnnnnnacaagtcaaaataaaatttaaattttcaccagtgattcatctc |
300 |
Q |
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| T |
32649336 |
tatatggaaaatataattagttctttttttttttttacaagtcaaaataaaatttaaattttcaccggtgattcatctc |
32649258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 37135835 - 37135868
Alignment:
| Q |
168 |
ttgagtactccattaatagaaattataggagaaa |
201 |
Q |
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| T |
37135835 |
ttgagtactccattaatagaaattgtaggagaaa |
37135868 |
T |
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