View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_39 (Length: 296)
Name: NF15659_low_39
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 24123535 - 24123265
Alignment:
| Q |
16 |
aacaacaacttcaaaacgttatacttgcatgattgatcttcttggcagagttgaccgcttggatgaagcgtagggcttaaggagaaacatgtctttgagc |
115 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24123535 |
aacaccaacttcaaaacattatacttgcatgattgatcttcttggcagagctggccgcttggatgaagcgtagggcttaaggagaaacatgcctttgagc |
24123436 |
T |
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| Q |
116 |
catgcgctgcgtcatagggagctctgcttggtgcaagccggatatatggaaatactgaactgggcgagaaggctgctgatatgttttttaagatgggaac |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| | |
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| T |
24123435 |
catgcgctgcttcatagggagctctgcttggtgcaagccgggtatatggaaatactgaactgggcgaggaggctgctgagatggtttttaagatgggacc |
24123336 |
T |
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| Q |
216 |
tcagaactcaggaatgtatgtcctcttttaaatccatatgcagcttcaggcagatgggtctatgctgatga |
286 |
Q |
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| T |
24123335 |
tcagaactcaggaatgtatgtcctcttttaaatccatatgcagcttcaggcagatgggtctatgctgatga |
24123265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 45169640 - 45169911
Alignment:
| Q |
16 |
aacaacaacttcaaaacgttatacttgcatgattgatcttcttggcagagttgaccgcttggatgaagcgtagggcttaaggagaaacatgtcttt-gag |
114 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |||| ||| |
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| T |
45169640 |
aacaccaacttcaaaacattatacttgcatgattgatcttcttggcagagttgaccgcttggaagaagcgcaggacttaaggagaaacatgccttttgag |
45169739 |
T |
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| Q |
115 |
ccatgcgctgcgtcatagggagctctgcttggtgcaagccggatatatggaaatactgaactgggcgagaaggctgctgatatgttttttaagatgggaa |
214 |
Q |
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| T |
45169740 |
ccaggcgctgcttcgtagggagctctgcttggtgcaagccggattcatggcaatactgaactgggcgagaaggctgctcaaatgttttttaagatgggac |
45169839 |
T |
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| Q |
215 |
ctcagaactcaggaatgtatgtcctcttttaaatccatatgcagcttcaggcagatgggtctatgctgatga |
286 |
Q |
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| T |
45169840 |
ctcagaactcaggaatgtatgtcctcttttcaatctatatgcagctttgggcagacgggtctatgctgatga |
45169911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 45166819 - 45167084
Alignment:
| Q |
21 |
caacttcaaaacgttatacttgcatgattgatcttcttggcagagttgaccgcttggatgaagcgtagggcttaaggagaaacatgtctttg-agccatg |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||| ||||| ||| ||||| ||||||||| |||| |||| | |
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| T |
45166819 |
caacttcaaaacattatacttgcatgattgatcttcttggcagagctggccgattggaagaagcacaggacttaataagaaacatgccttttcagcctgg |
45166918 |
T |
|
| Q |
120 |
cgctgcgtcatagggagctctgcttggtgcaagccggatatatggaaatactgaactgggcgagaaggctgctgatatgttttttaagatgggaactcag |
219 |
Q |
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||||| |||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |||||||||||| | ||||| |
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| T |
45166919 |
tgctgcttcatggggagctctacttggtgcaagccggattcatggcaatactgaactgggcgagaaggctgctgagatggtttttaagatggaacctcag |
45167018 |
T |
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| Q |
220 |
aactcaggaatgtatgtcc-tcttttaaatccatatgcagcttcaggcagatgggtctatgctgat |
284 |
Q |
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||||| |||||||| |||| ||||| ||||| ||||||||| || ||||||||||| |||||||| |
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| T |
45167019 |
aactcgggaatgtacgtccttctttcaaatctatatgcagcctcgggcagatgggttgatgctgat |
45167084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 45153647 - 45153843
Alignment:
| Q |
16 |
aacaacaacttcaaaacgttatacttgcatgattgatcttcttggcagagttgaccgcttggatgaagcgtagggcttaaggagaaacatgtcttt-gag |
114 |
Q |
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|||| ||| |||||||| ||||| ||||||||||||||||||||| |||| || || | |||| ||||| | ||||| |||||||||| |||| ||| |
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| T |
45153647 |
aacaccaaattcaaaacattataattgcatgattgatcttcttggtagagctggcctcctggaagaagcacataacttaatgagaaacatgccttttgag |
45153746 |
T |
|
| Q |
115 |
ccatgcgctgcgtcatagggagctctgcttggtgcaagccggatatatggaaatactgaactgggcgagaaggctgctgatatgttttttaagatgg |
211 |
Q |
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||| ||||| ||| ||||||||| | |||||||||||||| |||| ||| ||||||| || |||||||||||||| ||| ||||||| |||| |
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| T |
45153747 |
ccagatgctgcaacatggggagctctattaggtgcaagccggattcatggcaatgctgaactaggtgagaaggctgctgagatggtttttaatatgg |
45153843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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