View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_4 (Length: 654)
Name: NF15659_low_4
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 87 - 637
Target Start/End: Complemental strand, 43104213 - 43103662
Alignment:
| Q |
87 |
ataaaatcacatcttatcatatagatatttgtaannnnnnnn--ctttctattgacacatttctccccctcgaatgacaaacagggaaaggtgatggaaa |
184 |
Q |
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| T |
43104213 |
ataaaatcacatcttatcatatagatatttgtaattttttttttctttctattgacacatttctccccctcgaatgacaaacagggaaaggtgatggaaa |
43104114 |
T |
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| Q |
185 |
tgtttcaaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttgccctagtctaaagctcaaagagagtga |
284 |
Q |
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| T |
43104113 |
tgtttcaaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttgccctagtctaaagctcaaagagagtga |
43104014 |
T |
|
| Q |
285 |
ttatttgatgcctagaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggag |
384 |
Q |
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| T |
43104013 |
ttatttgatgcctagaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggag |
43103914 |
T |
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| Q |
385 |
cttgagaatgttctgcttcatattatcaacaaagctaatattggtaaagggaacattgttgctccaaaaattatctcagttgattgcaagatggggaata |
484 |
Q |
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| T |
43103913 |
cttgagaatgttctgcttcatattatcaacaaagctaatattggtaaagggaacattgttggtccaaaaattatctcagttgattgcaagatggggaata |
43103814 |
T |
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| Q |
485 |
tctcaattgatgctcataaacatttccctgaagctctatcagttcctaattaattagtaactgaaaattgcttatgatgaagaatgatatatttaaatca |
584 |
Q |
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| T |
43103813 |
tctcaattgatgctcataaacatttccctgaagctctatcagttcctaattaattagtaactgaaaattgcttatgatgaagaatgatatatttaaatca |
43103714 |
T |
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| Q |
585 |
aagccattgtatttcttgaggcttgtcaacttctgaaaattaatgtacgaata |
637 |
Q |
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| T |
43103713 |
aagcca-tgtatttcttgaggcttgtcaacttcagaaaattaatgtacgaata |
43103662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 190 - 504
Target Start/End: Complemental strand, 43107334 - 43107017
Alignment:
| Q |
190 |
caaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttgccctagtctaaagctcaaagagagtgatt--- |
286 |
Q |
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| T |
43107334 |
caaaattcacttgatgatgaaggaaagaagaaattcatctacctagaagatggaaataatgacttttgtcctagtttaaacctcaaagagagtgattgat |
43107235 |
T |
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| Q |
287 |
-atttgatgcctagaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatggagaggagc |
385 |
Q |
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| T |
43107234 |
tatctcatgcctaga-tgaactttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatgtacatggttggagagatggggaagagt |
43107136 |
T |
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| Q |
386 |
ttgagaatgttctgcttcatattatcaacaaagctaatattggtaaagggaacattgttgctccaaaaattatctcagttgattgcaagatggggaatat |
485 |
Q |
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| T |
43107135 |
ttgagaatgttatgcttcatatcatcaaaaaacctaatattggtaaagggaacactgttgatccaaaaattatctctgttgattgcaagttggggacaat |
43107036 |
T |
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| Q |
486 |
ctcaattgatgctcataaa |
504 |
Q |
| |
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| T |
43107035 |
ttcaattgatgctaataaa |
43107017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 43104324 - 43104244
Alignment:
| Q |
13 |
atacttcatgttatgtagagctagagcagcttctatattgagttaatatac----ttttaactttataaaataaaaatata |
89 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43104324 |
atacttcatgctatgtagagctagagcagcttctatattgagttaatatactttgttttaactttataaaataaaaatata |
43104244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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