View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_44 (Length: 277)
Name: NF15659_low_44
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 39304722 - 39304456
Alignment:
| Q |
1 |
ttttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatcc |
100 |
Q |
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| T |
39304722 |
ttttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaataatatcatcaccgttgattgtctttcttttttctctttgacatttatcc |
39304623 |
T |
|
| Q |
101 |
gatgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataacttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304622 |
gatgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataacttttt |
39304523 |
T |
|
| Q |
201 |
tcattattctaccaacatttgctataggaagaaaacgatcttgttctttattgctattgtgatgatg |
267 |
Q |
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| T |
39304522 |
tcattattctaccaacatttgctataggaagaaaacgatcttgttctttattgctattgtgatgatg |
39304456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 191
Target Start/End: Complemental strand, 38281774 - 38281618
Alignment:
| Q |
35 |
gttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccg |
134 |
Q |
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| T |
38281774 |
gttgtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaactaatgaactcag |
38281675 |
T |
|
| Q |
135 |
acacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaa |
191 |
Q |
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| T |
38281674 |
agacacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctggaa |
38281618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 44105545 - 44105492
Alignment:
| Q |
195 |
cttttttcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
249 |
Q |
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| T |
44105545 |
cttttttcatgattctacccacattggctatagga-gaaaacgatcttgttcttt |
44105492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 41866750 - 41866626
Alignment:
| Q |
20 |
tcttcaaagcctaacgttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaa |
119 |
Q |
| |
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|||||||| |||||||| || || ||||||| | ||| || || ||||| ||||||| ||| ||||| ||||| ||||| || ||||| ||||||| | |
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| T |
41866750 |
tcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatga |
41866651 |
T |
|
| Q |
120 |
aacttatgaactccgacacacattc |
144 |
Q |
| |
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| || ||||||||||| |||||||| |
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| T |
41866650 |
agctgatgaactccgatacacattc |
41866626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 39786371 - 39786519
Alignment:
| Q |
101 |
gatgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataacttttt |
200 |
Q |
| |
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|||||||| || || |||||||| | ||||| || ||||| ||||| | || ||||| ||||| || ||||||||| |||||| ||| | | || || |
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| T |
39786371 |
gatgcttcaccagttacaaaactaacaaactctgagacacactcttgcatggtttctttagcatctttcgagatttttgcatttggaggcaagatttgtt |
39786470 |
T |
|
| Q |
201 |
tcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
249 |
Q |
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|||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
39786471 |
tcatgatcctaccaacattagctattggaagcaaacgatcttgctcttt |
39786519 |
T |
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