View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_46 (Length: 274)
Name: NF15659_low_46
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 449409 - 449164
Alignment:
| Q |
14 |
agatgaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaagga |
113 |
Q |
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| T |
449409 |
agatgaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaagga |
449310 |
T |
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| Q |
114 |
agttgagaccaatctacctccatggatgaaattttgcacctgttcatatgaaa----gttcatggaaggcatatggaaaataaaaatttgttttagttga |
209 |
Q |
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| T |
449309 |
agttgagaccaatctacctccatggatggaattttgcacctgttcatatgaaagtacgttcatggtaggcatatggaaaataaatatttgttttagttga |
449210 |
T |
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| Q |
210 |
gtttgaatgaattgttgttgtttcatcacccaaccaaggacgaagg |
255 |
Q |
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| T |
449209 |
gtttgaatgaattattgttgtttcatcacccaagcaaggacgaagg |
449164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 9687513 - 9687636
Alignment:
| Q |
18 |
gaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaaggaagtt |
117 |
Q |
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| T |
9687513 |
gaagagcaccaagtggaacagacggaacgaaagcgaagaagatagagttcactgttgtcgagtttttgtgatattagttgcagaagttctctcggaagct |
9687612 |
T |
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| Q |
118 |
gagaccaatctacctccatggatg |
141 |
Q |
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| T |
9687613 |
gagaccaatctgcttccatggatg |
9687636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 9330672 - 9330779
Alignment:
| Q |
18 |
gaagagcgccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaagctctgaaggaagtt |
117 |
Q |
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| T |
9330672 |
gaagaacgccatgttgaacatacagaacgaaagcgaaggaggcaaagtacagtgtcg---agtttttgtgaaattagttgaagaagttctgaaggaaggt |
9330768 |
T |
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| Q |
118 |
gagaccaatct |
128 |
Q |
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| T |
9330769 |
gagaccaatct |
9330779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 9337403 - 9337466
Alignment:
| Q |
78 |
agtttttgtgaaattagttgcagaagctctgaaggaagttgagaccaatctacctccatggatg |
141 |
Q |
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| T |
9337403 |
agtttttgtgaaattagttgaagaagttctgaaggaaggtgagaccaatctgcagccatggatg |
9337466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 9710458 - 9710535
Alignment:
| Q |
25 |
gccatgtggaacaaacagaacgaaagcgaatgaggtagagctcaatgttgctgagtttttgtgaaattagttgcagaa |
102 |
Q |
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| T |
9710458 |
gccaagtggaacatacggaacgcaagcgaatgaggtagatctcagtgttgttcagtttgtgggatatgagttgcagaa |
9710535 |
T |
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