View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_47 (Length: 267)
Name: NF15659_low_47
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_47 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 36161253 - 36161203
Alignment:
| Q |
17 |
acatggccggtcctaagatttttaatgcattgggggaattaataaactgtg |
67 |
Q |
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| T |
36161253 |
acatggccggtcctaagatttttaatgcatcgggggaattaataaactgtg |
36161203 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 3193531 - 3193585
Alignment:
| Q |
112 |
gcaaaagattcattcataatcnnnnnnntttaaaaacatattttcaatataatta |
166 |
Q |
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| T |
3193531 |
gcaaaagattcattcataatcaaagttctttaaaaacatattttcaatataatta |
3193585 |
T |
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Target: scaffold0777 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 5965 - 5904
Alignment:
| Q |
112 |
gcaaaagattcattcataatcnnnnnnntttaaaaacatattttcaatataattaaccaaag |
173 |
Q |
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| T |
5965 |
gcaaaaaattcattcataatcaaaattctttaaaaacatattttcaatataattaatcaaag |
5904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 2113959 - 2113898
Alignment:
| Q |
112 |
gcaaaagattcattcataatcnnnnnnntttaaaaacatattttcaatataattaaccaaag |
173 |
Q |
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| T |
2113959 |
gcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag |
2113898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 29118592 - 29118537
Alignment:
| Q |
112 |
gcaaaagattcattcataatcnnnnnnntttaaaaacatattttcaatataattaa |
167 |
Q |
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| T |
29118592 |
gcaaaatattcattcataatcaaagttctttaaaaacatattttcaatataattaa |
29118537 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 31153646 - 31153701
Alignment:
| Q |
112 |
gcaaaagattcattcataatcnnnnnnntttaaaaacatattttcaatataattaa |
167 |
Q |
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| T |
31153646 |
gcaaaagattcattcatgatcaaagttatttaaaaacatattttcaatataattaa |
31153701 |
T |
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