View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_5 (Length: 647)
Name: NF15659_low_5
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 597; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 10 - 629
Target Start/End: Complemental strand, 43142315 - 43141696
Alignment:
| Q |
10 |
gcacagaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgac |
109 |
Q |
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| T |
43142315 |
gcacagaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgac |
43142216 |
T |
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| Q |
110 |
aaaggaaagaaaggctattgccattcttcatagcatccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142215 |
aaaggaaagaaaggctattgccattcttcatagcatctttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcat |
43142116 |
T |
|
| Q |
210 |
gacaacggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaata-gaagcaaaagcatacccaagagcaagtgttaagcaaat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
43142115 |
gacaacggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaataagaagcaagagcatacccaagagcaagtgttaagcaaat |
43142016 |
T |
|
| Q |
309 |
aaaatatccctgcagagcaaacaaaatattcagatttatgattatgtatcatggatatttctctaaaaacaacaaaagccaaggaatacaaagcaatatt |
408 |
Q |
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| T |
43142015 |
aaaatatccctgcagagcaaacaaaatattcagatttatgattatgtatcatg-atatttctctaaaaacaacaaaagccaaggaatacaaagcaatatt |
43141917 |
T |
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| Q |
409 |
taaggaaacacaatgtagatttccctattcctacaatgtttcttgtgttgcaagtatatcatgatatctcaatgcaagaattatggatgtcaaatctgtg |
508 |
Q |
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| T |
43141916 |
taaggaaacacaatgtagatttccctattcctacaatgtttcttgtgttgcaagtatatcatgatatctcaatgcaagaattatggatgtcaaatctgtg |
43141817 |
T |
|
| Q |
509 |
cacgtgacagatgggaagcaaagcaagccaagctgatacatcaactataaaatggggagttaaatcagttaaaaagtagagactgcacgctaaatctcat |
608 |
Q |
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| T |
43141816 |
cacgtgacagatgggaagcaaagcaagccaagctgatacatcaactataaaatggggagttaaatcagttaaaaagtagagactgcacgctaaatctcat |
43141717 |
T |
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| Q |
609 |
tgcatttaaggatagctaaat |
629 |
Q |
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| T |
43141716 |
tgcatttaaggatagctaaat |
43141696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 46 - 372
Target Start/End: Complemental strand, 43153875 - 43153551
Alignment:
| Q |
46 |
atgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaaggaaagaaaggctattgccattcttcatagcat |
145 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | |
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| T |
43153875 |
atgactactgttactcttggaagattggcctgatagaagtgctcaagctcatttatgtcatgacataggaaagaaagactattgccattctgcatagctt |
43153776 |
T |
|
| Q |
146 |
ccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcatgacaacggaagcgtttccagattctatgac-attca |
244 |
Q |
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| T |
43153775 |
ccttcatttgttttatctctctgttcctgtaa-gggaaaaattcagtatttctcatagggg--tgacaatgaaagtgtttctggattctgacactattga |
43153679 |
T |
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| Q |
245 |
ttattaagtaatgagtacctaaaat-agaagcaaaagcatacccaagagcaagtgttaagcaaataaaatatccctgcagagcaaacaaaatattcagat |
343 |
Q |
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|| | | |||||||||||||| || |||||||| ||| ||||||||||||||||||||||||| ||| ||||||||| || ||||| || |||||||| |
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| T |
43153678 |
gtaatgactaatgagtacctaacataagaagcaagagcccacccaagagcaagtgttaagcaaatgaaacatccctgcaaagtaaacataacattcagat |
43153579 |
T |
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| Q |
344 |
ttatgattatgtatcatggatatttctct |
372 |
Q |
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|||| ||||| || ||| ||||||||||| |
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| T |
43153578 |
ttattattatttaccat-gatatttctct |
43153551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 584
Target Start/End: Complemental strand, 43153267 - 43153166
Alignment:
| Q |
488 |
attatggatgtcaaatctgtgcacgtgacagatgggaagcaaagcaa-gccaagctgata---catcaactataaaa-tggggagttaaatcagttaaaa |
582 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| | |||||||||||| |||||| | ||||||||||||| |
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| T |
43153267 |
attatggatgtcaaatctgtgaacatgacagatgggaagcaaagcaaccccaagctgatacctcctcaactataaaactggggaataaaatcagttaaaa |
43153168 |
T |
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| Q |
583 |
ag |
584 |
Q |
| |
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|| |
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| T |
43153167 |
ag |
43153166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Complemental strand, 43153348 - 43153311
Alignment:
| Q |
430 |
tccctattcctacaatgtttcttgtgttgcaagtatat |
467 |
Q |
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||||||| |||||| ||||||||||||||||||||||| |
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| T |
43153348 |
tccctatccctacagtgtttcttgtgttgcaagtatat |
43153311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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