View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_54 (Length: 253)
Name: NF15659_low_54
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 161738 - 161499
Alignment:
| Q |
1 |
gtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaataaataaatacacata |
100 |
Q |
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| T |
161738 |
gtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaataaataaatacacata |
161639 |
T |
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| Q |
101 |
acactca--tcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaagacgtacaaagttg |
198 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161638 |
acacacacatcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaagacgtacaaagttg |
161539 |
T |
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| Q |
199 |
aatgcagtgtaaacaagaaaagcaatcccaaccaaagtag |
238 |
Q |
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| T |
161538 |
aatgcagtgtaaacaagaaaagcaatcccaaccaaagtag |
161499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 153159 - 153022
Alignment:
| Q |
101 |
acactcatcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaagacgtacaaagttgaa |
200 |
Q |
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|||| ||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
153159 |
acacacataaatctagttatgataataattcaaaccatgaattatacattttcaagtttgtctagtagaaaagaatcttggcaagacgtacaaagttgaa |
153060 |
T |
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| Q |
201 |
tgcagtgtaaacaagaaaagcaatcccaaccaaagtag |
238 |
Q |
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| T |
153059 |
tgcagtgtaaacaagaaaagcaatcccaaccaaagtag |
153022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 33687468 - 33687504
Alignment:
| Q |
18 |
ttcgaactctaaattacccacttattcactttaaggg |
54 |
Q |
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| T |
33687468 |
ttcgaactctaaattccccacttattcaccttaaggg |
33687504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 33704474 - 33704510
Alignment:
| Q |
18 |
ttcgaactctaaattacccacttattcactttaaggg |
54 |
Q |
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| T |
33704474 |
ttcgaactctaaattccccacttattcaccttaaggg |
33704510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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