View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15659_low_55 (Length: 251)
Name: NF15659_low_55
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 39027448 - 39027322
Alignment:
| Q |
7 |
gagagaagaaaaatgaaagtgatgagcctctaacacaacccttaaataaatatgtatatttccagaaaccacaagggaatgttagagggaagaaagccaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39027448 |
gagagaagaaaaatgaaagtgatgagcctctaacacaacccttaaataaatatgtatatttccagaaaccacaagggaatgttagagggaagaaagccaa |
39027349 |
T |
|
| Q |
107 |
gttaattaaaaaaacaaaatcatgaac |
133 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
39027348 |
gttaattaaaaaaacaaaatcatgaac |
39027322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 39027288 - 39027224
Alignment:
| Q |
167 |
gtgatgtgcaatatgttagtattttaaaaaagttgctaaattttatttagggtatattatcctat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39027288 |
gtgatgtgcaatatgttagtattttaaaaaatttgctaaattttatttagggtatattatcctat |
39027224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University