View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_6 (Length: 638)
Name: NF15659_low_6
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 13 - 623
Target Start/End: Complemental strand, 39555298 - 39554685
Alignment:
| Q |
13 |
aatatcaactaactattataactaccaagaaccaagtgtttggttagttctcagctcagctatagatggaaataaaagcctgagttactaagcattgaga |
112 |
Q |
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| T |
39555298 |
aatatcaactaaatattataactaccaagaaccaagtgtttggttagttctcagctcagctatagatggaaataaaagcgtgagttactaagcattgaga |
39555199 |
T |
|
| Q |
113 |
atcaatgaactcctttgttgaactgcaccataatggagtcatacaacaaagtagaccataaagcccagcataaaatggcagaaactagaatgttttaatc |
212 |
Q |
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| T |
39555198 |
atcaatgaactcctttgaggaactgcaccataatggagtcatacaacaaagtagaccataaagcccagcataaaatggcagaaactagaatgttttaatc |
39555099 |
T |
|
| Q |
213 |
ttaacaatatttttacatttttacttaaaattaaaatttaggaaaagttggttgataaaac---gactcagtacataattagagataaagaatattgtta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
39555098 |
ttaacaatatttttacatttttacttaaaattaaaatttaggaaaagttggttgataaaacaacgactcggtacataattagagataaagaatattgtta |
39554999 |
T |
|
| Q |
310 |
agctgtctattgactaaggacgacacagataaagacattaactttcttcctaagttgagagtcgttattggcagggctccatatattaccagatatttga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554998 |
agctgtctattgactaaggacgacacagataaagacattaactttcttcctaagttgagagtcgttattggcagggctccatatattaccagatatttga |
39554899 |
T |
|
| Q |
410 |
tcctagaaaagccagtgatacagtatgttctcaaaactatcataaaaattgatagccataaatgaggctaaaacttaaattgaataactggtgcactgga |
509 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554898 |
tcctagaaaagccagtgatacaatatgttcttaaaactatcataaaaattgatagccataaatgaggctaaaacttaaattgaataactggtgcactgga |
39554799 |
T |
|
| Q |
510 |
tctcatacttataaagttggatcaatgatacccatcttgcacagtcatttgtgatgccaagaacaaggccataacatttaaatgctaatatgctttagtc |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554798 |
tctcatacttataaagttggatcaatgatacccatcttgcacagtcatttgtgatgccaagaacaaggccataacatttaaatgctaatatgctttagtc |
39554699 |
T |
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| Q |
610 |
tctacataaaaatg |
623 |
Q |
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|||||||||||||| |
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| T |
39554698 |
tctacataaaaatg |
39554685 |
T |
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