View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15659_low_61 (Length: 239)
Name: NF15659_low_61
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 4743154 - 4743362
Alignment:
| Q |
22 |
aaacgaaaaaagatattcaaagagaatttagaatacatagagaatttcaacaatgctggtaacaagagttacaagcttggcctaaatcaatattctgatt |
121 |
Q |
| |
|
||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4743154 |
aaacggaaaaggatattcaaaaataatttagaatacatagagaatttcaacaatgctggtaacaagagttacaagctgggcctaaatcaatattctgatt |
4743253 |
T |
|
| Q |
122 |
taactagtgaagagtttattgcttcacatactggactataagtttctaaccaactttcttcctctaagatgagatcagctgcagtgcccttcaacttgaa |
221 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4743254 |
taactagtgatgagtttcttgcttcacatactggactcaaagtttctaaacaactttcttcctctaagatgagatcagctgcagtgcccttcaacttgaa |
4743353 |
T |
|
| Q |
222 |
tgatgatgt |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
4743354 |
tgatgatgt |
4743362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 4735222 - 4735432
Alignment:
| Q |
22 |
aaacgaaaaaagatattcaaagagaatttagaatacatagagaatttcaacaatgctggtaacaagagttacaagcttggcctaaatcaatattctgatt |
121 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4735222 |
aaacgcaaaaaaatattcaaggagaatttggaatatatcgagaatttcaacaatgttggtaacaagagttacaaacttggcctaaatcgatattctgatt |
4735321 |
T |
|
| Q |
122 |
taactagtgaagagtttattgcttcacatactggactataagtttctaaccaactttcttcctctaagatgagatcagctgcagtgcccttcaacttgaa |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||| ||||||||||||| |||| | ||||||||| |||| |
|
|
| T |
4735322 |
taaccagtgaagagtttattgcttcacatactggattcaaagtttcagaccaactttctgactccaagatgagatcagttgcaatacccttcaacctgaa |
4735421 |
T |
|
| Q |
222 |
tgatgatgtcc |
232 |
Q |
| |
|
||||||||||| |
|
|
| T |
4735422 |
tgatgatgtcc |
4735432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 28284906 - 28284810
Alignment:
| Q |
42 |
agagaatttagaatacatagagaatttcaacaatgctggtaacaagagttacaagcttggcctaaatcaatattctgatttaactagtgaagagttt |
138 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| || ||| ||| ||| | || || ||||||| ||||||||||| | |||||||||| |
|
|
| T |
28284906 |
agagaatttagaatacatagagaattttaaccgtgctggaaaacagacttataagttgggtctgaatcaattctctgatttaacaaatgaagagttt |
28284810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University