View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_64 (Length: 238)
Name: NF15659_low_64
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_64 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 28785100 - 28785321
Alignment:
| Q |
18 |
aaacatatctgtctctacctacttatgatactaataaatgctttttacattatagtagcagtatagtatatcactgaaatgaaatgttgcccttttattt |
117 |
Q |
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| T |
28785100 |
aaacatatctgtctctacctacttatgatactaataaatgctttttacattatagtagcagtatagtatatcactgaaatgaaatgttgcccttttattt |
28785199 |
T |
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| Q |
118 |
ttgac-nnnnnnnnnnnntgatagcgcaatgtttctttctacttttaagtttttcacacatgaatggatggatcattaagttttactacttcacagccaa |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28785200 |
ttgacaaaaaaataaaaatgatagcgcaatgtttctttctacttttaagtttttcacacatgaatggatggatcattaagttttactacttcacagccaa |
28785299 |
T |
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| Q |
217 |
cacatttatcaacttttcgctt |
238 |
Q |
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||||||||||||||||| |||| |
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| T |
28785300 |
cacatttatcaacttttagctt |
28785321 |
T |
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