View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_7 (Length: 630)
Name: NF15659_low_7
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 13 - 615
Target Start/End: Original strand, 34425823 - 34426426
Alignment:
| Q |
13 |
tagggaaacaagtagggatattctgttattctataatacttt-aagtctaaaaaatattgaaataaactagcagctgaaaatggtaacatataacatttg |
111 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34425823 |
tagggaaacaagtagggatattttgttattctataatacttttaagtctaaaaaatattgaaataaactagcagctgaaaatggtaacatataacatttg |
34425922 |
T |
|
| Q |
112 |
ggcttacgatgagtcctgacgagctggatatatctcaatcaatttaactcttctgtcattcttcccatttgacccgaactttccaacaggtaaattcttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34425923 |
ggcttacgatgagtcctgacgagctggatatatctcaatcaatttaactcttctgtcattcttcccatttgacccgaactttccaacaggtatattcttc |
34426022 |
T |
|
| Q |
212 |
agatcagtggatatgcctatcttaactatatgagtgggaccaatatattttagcatgttcactaataccttataaccatcgcctgaaatgcaagacaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34426023 |
agatcagtggatatgcctatcttaactatatgagtgggaccaatatattttagcatgttcactaataccttataaccatcacctgaaatgcaagacaaaa |
34426122 |
T |
|
| Q |
312 |
cacactgaatgagtaacataataattgatatattgttattggtcgagaaaagcagtagtttatgtggcgtaaaaatacaaaatgtacgagcttaccttta |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
34426123 |
cacactgaatgagtaacataataattgatatattgttattggtcgagaaaagcagtagtttatgtggcggaaaaatacaaaatgtccgagcttaccttta |
34426222 |
T |
|
| Q |
412 |
acccagccagaggtattcactacaagaggcaagtgaatcttagaagaattttgtctcttatcaaaggtgcaatactcctttcgataataatcataaatag |
511 |
Q |
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| T |
34426223 |
acccagccagaggtattcactacaagaggcaagtgaatcttagaagaattttgtctcttatcaaaggtgcaatactcctttcgataataatcataaatag |
34426322 |
T |
|
| Q |
512 |
aacatatgtattttaagcatgttgacggatctttctgggaagaaacatcaccnnnnnnnngggatctgttacccaataaacgacagaaagtgagttaagc |
611 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34426323 |
aacatatgtattttaagtatgttgacggatctttctgagaagaaacatcaccaaaaaaaagggatctgttacccaataaacgacagaaagtgagttaagc |
34426422 |
T |
|
| Q |
612 |
aact |
615 |
Q |
| |
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|||| |
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| T |
34426423 |
aact |
34426426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 215 - 397
Target Start/End: Original strand, 34418880 - 34419059
Alignment:
| Q |
215 |
tcagtggatatgcctatcttaactatatgagtgggaccaatatattttagcatgttcactaataccttataaccatcgcctgaaatgcaagacaaaacac |
314 |
Q |
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|||||||||| | |||||||||| | ||||||||||||||||||||||||||||| ||||||||| | ||||||| | |||||||||||||||||||| |
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| T |
34418880 |
tcagtggataagtctatcttaacaacatgagtgggaccaatatattttagcatgtccactaatacttcataaccaacacctgaaatgcaagacaaaacca |
34418979 |
T |
|
| Q |
315 |
actgaatgagtaacataataattgatatattgttattggtcgagaaaagcagtagtttatgtggcgtaaaaatacaaaatgta |
397 |
Q |
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|||||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||| || ||||||||||||||| |
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| T |
34418980 |
actgaatgagtaacataataattgatatgttgtta---gtccaggaaagcagtagtttatgttaagtcaaaatacaaaatgta |
34419059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 517
Target Start/End: Original strand, 34419099 - 34419216
Alignment:
| Q |
400 |
agcttacctttaacccagccagaggtattcactacaagaggcaagtgaatcttagaagaattttgtctcttatcaaaggtgcaatactcctttcgataat |
499 |
Q |
| |
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|||| |||||||||||||||||| |||||||||| ||||||| ||||| ||||||| ||||| || |||||||||||||| ||||| |||| |||||| |
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| T |
34419099 |
agctcacctttaacccagccagaagtattcactataagaggcgtctgaattttagaagcattttttcgcttatcaaaggtgcgatacttcttttgataat |
34419198 |
T |
|
| Q |
500 |
aatcataaatagaacata |
517 |
Q |
| |
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||||||||| ||||||| |
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| T |
34419199 |
gatcataaatggaacata |
34419216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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