View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_70 (Length: 227)
Name: NF15659_low_70
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 39897548 - 39897427
Alignment:
| Q |
88 |
cctgtaatagtgtaatcatacagttctggtttgttttctcttagcgtttccgttaataaaatgtacggactatcatttgtgaattgagttagactttgaa |
187 |
Q |
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| T |
39897548 |
cctgtaatagtgtaatcatacagttctggtttgttttctcttagcgtttccgttaataaaatgtatggactatcatttgtgaactgagttagactttgaa |
39897449 |
T |
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| Q |
188 |
cttggtgttggataatacaaat |
209 |
Q |
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| T |
39897448 |
tttggtgttgaataatacaaat |
39897427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 39897692 - 39897606
Alignment:
| Q |
7 |
ataccttcatcgcccacgtct---acatacaggagacacaagaattgagga---taatcggcaacattgagctggttgatggtcttt |
87 |
Q |
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| T |
39897692 |
ataccttcatcgcccacttcttctacatccaggagacacaagaattgaggaggatgattggcaacattgagctggttgatggtcttt |
39897606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 39890080 - 39890002
Alignment:
| Q |
92 |
taatagtgtaatcatacagttctggtttgttttctcttagcgtttccgttaataaaatgtacggactatcatttgtgaa |
170 |
Q |
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| T |
39890080 |
taataatgtcatcatacagttttgatttgttttctcttggtgttctcattaataaaatgtatggacaatcgtttgtgaa |
39890002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 39882551 - 39882487
Alignment:
| Q |
102 |
atcatacagttctggtttgttttctcttagcgtttccgttaataaaatgtacggactatcatttg |
166 |
Q |
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| T |
39882551 |
atcatacaattttgatttgttttcttttagtgttccggttaataaaatgtatggacaatcatttg |
39882487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 41527669 - 41527737
Alignment:
| Q |
102 |
atcatacagttctggtttgttttctcttagcgtttccgttaataaaatgtacggactatcatttgtgaa |
170 |
Q |
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| T |
41527669 |
atcattcagttatgatttgttttctcttggtgttcccgttaataaaatgtatggacaatcgtttttgaa |
41527737 |
T |
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