View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_73 (Length: 223)
Name: NF15659_low_73
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_73 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44884509 - 44884287
Alignment:
| Q |
1 |
gtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaagacctttcactctcaagtacca |
100 |
Q |
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| T |
44884509 |
gtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaagacctttcactctcaagtacca |
44884410 |
T |
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| Q |
101 |
tcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgatcgtttgtcttcaaacccttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884409 |
tcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgatcgtttgtcttcaaacccttct |
44884310 |
T |
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| Q |
201 |
ccttcaccttctcgactcagatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44884309 |
ccttcaccttctcgactcagatt |
44884287 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 9019385 - 9019429
Alignment:
| Q |
179 |
tcgtttgtcttcaaacccttctccttcaccttctcgactcagatt |
223 |
Q |
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| T |
9019385 |
tcgtttgtcttcaaacccgtctccttccccttctcgactcagatt |
9019429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 30769868 - 30769922
Alignment:
| Q |
76 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
130 |
Q |
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||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
30769868 |
gaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcat |
30769922 |
T |
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