View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_8 (Length: 599)
Name: NF15659_low_8
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 48544408 - 48544065
Alignment:
| Q |
1 |
tgagaaccataattgaaagagagaactctactctaagacaactgtacaatatgaacacgtttaccaaaaaagaaagaaataacagtaacgacaaggacaa |
100 |
Q |
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| T |
48544408 |
tgagaaccataattgaaagagagaactcta-----agacaactgtacaatatgaacacgtttaccaaaaaagaaagaaataacagtaacgacaagtacaa |
48544314 |
T |
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| Q |
101 |
aataattatttgatcatcaattattcaccagcacaagaatatctgtgttagccttgaaacaaaactattgaagtaaatactttaatttatcagcaagtgg |
200 |
Q |
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| T |
48544313 |
aataattatttgatcatcaattattcaccagcacaagaatatctgtgttagccttgaaacaaaactattgaagtaaatac-----tttatcagcaagtgg |
48544219 |
T |
|
| Q |
201 |
accaatacctgctctaaatatctctgtagagcatctattccttacaagtgttttatttagtgtcctcagattaagtaaatctatgtatgactaaggcaat |
300 |
Q |
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| T |
48544218 |
accaatacctgctctaaatagctctgtag--------------acaagtgttttatttagtgtcctcagattaagtaaatctatgtatgactaaggcaat |
48544133 |
T |
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| Q |
301 |
taagtccacaaatcaaggatataaaaaatgtaacactttgaatactaaactaaaatactaaccatttg |
368 |
Q |
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| T |
48544132 |
taagtccacaaatcaaggatataaaaaatgtaacactttgaatactaaactaaaatactaaccatttg |
48544065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 365 - 585
Target Start/End: Complemental strand, 48544045 - 48543830
Alignment:
| Q |
365 |
tttgcaatacacgtgaaaatgattgatagtgagtggacctaacatacggtgtatccaaagtgtacaccacggacggcaatcattcaaatgaattgcgtct |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48544045 |
tttgcaatacacgtgaaaatgattgatagtgagtggacctaacatacggtgtatccaaagtgtacaccacggacggcaatcattcaaataaattgcgtct |
48543946 |
T |
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| Q |
465 |
agagcagagcatgactcactacatatcttcttccacatgccacaattatataggacctgttcttatttcaaattgacataatcctgatcttggttaggat |
564 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48543945 |
agagca-----tgactcactacatatcttcttccacatgccacaattatataggacctgttcttatttcaaattgacataatcctgatcttggttaggat |
48543851 |
T |
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| Q |
565 |
tgggataattatgtaattaat |
585 |
Q |
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| T |
48543850 |
ttggataattatgtaattaat |
48543830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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