View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_low_80 (Length: 201)

Name: NF15659_low_80
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_low_80
NF15659_low_80
[»] chr6 (53 HSPs)
chr6 (13-186)||(26142791-26142964)
chr6 (13-186)||(25538466-25538639)
chr6 (13-186)||(25481668-25481841)
chr6 (13-186)||(25579645-25579818)
chr6 (13-186)||(26048771-26048944)
chr6 (13-186)||(26069940-26070113)
chr6 (13-186)||(26055852-26056025)
chr6 (13-186)||(26075822-26075995)
chr6 (13-179)||(26655922-26656088)
chr6 (13-179)||(26761893-26762059)
chr6 (13-179)||(27229165-27229331)
chr6 (13-179)||(27338153-27338319)
chr6 (13-179)||(27398893-27399059)
chr6 (13-179)||(27698582-27698748)
chr6 (15-179)||(27718469-27718633)
chr6 (13-179)||(27531285-27531451)
chr6 (18-179)||(26802375-26802536)
chr6 (15-179)||(27611092-27611256)
chr6 (15-179)||(27724935-27725099)
chr6 (24-179)||(28781072-28781227)
chr6 (45-179)||(28786211-28786345)
chr6 (45-179)||(28792332-28792466)
chr6 (15-179)||(27604795-27604959)
chr6 (13-169)||(26884106-26884262)
chr6 (17-168)||(26646423-26646574)
chr6 (17-168)||(26752391-26752542)
chr6 (13-175)||(27678883-27679045)
chr6 (18-175)||(31284225-31284382)
chr6 (15-175)||(27593110-27593270)
chr6 (13-179)||(26861549-26861715)
chr6 (13-169)||(26622919-26623075)
chr6 (13-169)||(26728897-26729053)
chr6 (13-175)||(27677702-27677864)
chr6 (13-169)||(27706490-27706646)
chr6 (11-67)||(27427692-27427748)
chr6 (45-108)||(25507029-25507092)
chr6 (13-179)||(28181047-28181213)
chr6 (13-179)||(28185299-28185465)
chr6 (45-179)||(28234497-28234631)
chr6 (13-178)||(26823774-26823939)
chr6 (54-179)||(29825960-29826085)
chr6 (15-141)||(28325452-28325578)
chr6 (45-105)||(28226957-28227017)
chr6 (132-175)||(27427810-27427853)
chr6 (45-96)||(28242820-28242871)
chr6 (63-105)||(26937101-26937143)
chr6 (81-175)||(26949598-26949692)
chr6 (45-95)||(28098489-28098539)
chr6 (15-96)||(26342024-26342105)
chr6 (13-130)||(28149920-28150036)
chr6 (13-145)||(28297801-28297933)
chr6 (13-145)||(28514140-28514272)
chr6 (75-175)||(29697477-29697577)
[»] scaffold0349 (2 HSPs)
scaffold0349 (13-179)||(3509-3676)
scaffold0349 (24-179)||(14454-14609)
[»] scaffold1254 (1 HSPs)
scaffold1254 (45-179)||(37-171)
[»] scaffold0419 (1 HSPs)
scaffold0419 (45-179)||(7458-7592)
[»] scaffold0277 (2 HSPs)
scaffold0277 (45-179)||(13752-13886)
scaffold0277 (45-179)||(4791-4925)
[»] chr1 (3 HSPs)
chr1 (13-168)||(268432-268587)
chr1 (13-168)||(28127754-28127910)
chr1 (13-168)||(28164437-28164592)
[»] scaffold0003 (2 HSPs)
scaffold0003 (11-67)||(59615-59671)
scaffold0003 (132-175)||(59510-59553)
[»] chr4 (8 HSPs)
chr4 (11-67)||(17989126-17989182)
chr4 (11-67)||(18073807-18073863)
chr4 (13-179)||(18724160-18724326)
chr4 (13-157)||(18731579-18731723)
chr4 (13-168)||(18655552-18655707)
chr4 (13-168)||(18699475-18699630)
chr4 (132-175)||(17989244-17989287)
chr4 (132-175)||(18073702-18073745)
[»] scaffold0019 (1 HSPs)
scaffold0019 (13-179)||(58370-58536)
[»] chr8 (1 HSPs)
chr8 (13-168)||(29273858-29274013)
[»] scaffold0038 (4 HSPs)
scaffold0038 (45-179)||(34658-34792)
scaffold0038 (15-141)||(116767-116893)
scaffold0038 (45-105)||(27455-27515)
scaffold0038 (45-96)||(42982-43033)
[»] chr2 (2 HSPs)
chr2 (45-105)||(3279695-3279755)
chr2 (87-175)||(17993846-17993934)
[»] scaffold0012 (1 HSPs)
scaffold0012 (75-149)||(241831-241905)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 53)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 26142964 - 26142791
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26142964 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttcaag 26142865  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26142864 atcattatcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgc 26142791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 25538639 - 25538466
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538639 atgaagaagatgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 25538540  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  25538539 atcattatcatctatgaaagtactaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgc 25538466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 25481841 - 25481668
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  25481841 atgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaag 25481742  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25481741 atcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgc 25481668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 25579818 - 25579645
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  25579818 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaag 25579719  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  25579718 atcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaaaagtgttgc 25579645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 26048944 - 26048771
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||    
T  26048944 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctcctctttcaag 26048845  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26048844 atcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgc 26048771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 26070113 - 26069940
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||    
T  26070113 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctcctctttcaag 26070014  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26070013 atcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgc 26069940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 26056025 - 26055852
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  26056025 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttgaag 26055926  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||| ||||| |||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26055925 atcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgc 26055852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 26075995 - 26075822
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  26075995 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctcctctttgaag 26075896  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaattgttgc 186  Q
    |||||| ||||| |||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26075895 atcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgc 26075822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 26656088 - 26655922
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||   |||    
T  26656088 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctcctctgagaag 26655989  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||||| ||||| ||||||||| | |||||||| |||||||||||||| |||||||| |||||||||    
T  26655988 atcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaa 26655922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 26762059 - 26761893
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||   |||    
T  26762059 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctcctctgagaag 26761960  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||||| ||||| ||||||||| | |||||||| |||||||||||||| |||||||| |||||||||    
T  26761959 atcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaa 26761893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 27229331 - 27229165
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||| |||||||||| |||    
T  27229331 atgaagaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcctctttgaag 27229232  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||||| ||||| ||||| ||| | |||||||||||| |||||||||| |||||||| |||||||||    
T  27229231 atcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaa 27229165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 27338153 - 27338319
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27338153 atgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaag 27338252  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||| || ||||| ||||| ||    ||||||||||||||||||||||| |||||||| |||||||||    
T  27338253 atcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaa 27338319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 27398893 - 27399059
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27398893 atgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaag 27398992  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||| || ||||| ||||| ||    ||||||||||||||||||||||| |||||||| |||||||||    
T  27398993 atcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaa 27399059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 27698582 - 27698748
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||  |||||| |  |||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||| |||    
T  27698582 atgaagaagatgcatagttgagagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaag 27698681  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||||| ||||| ||||| ||| | |||||||||||| |||||||||| |||||||| |||||||||    
T  27698682 atcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaa 27698748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 27718469 - 27718633
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagat 114  Q
    |||||||| |||||||||  |||||| |  |||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||| |||||    
T  27718469 gaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagat 27718568  T
Q  115 cattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||| ||||| ||||| ||| | |||||||||||| |||||||||| |||||||| |||||||||    
T  27718569 cattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaa 27718633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 27531285 - 27531451
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||| ||| ||||| ||    |||||||||||||||||||||||||||| |||    
T  27531285 atgaagaagatgcatagttttcagaaaatacgggaataaaaatcctagatttttcaatggcattttttagtgatggtgtgatttcatctcctctttgaag 27531384  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||||| ||||| ||||| |||   |||||||||||| |||||||||| |||||||| |||||||||    
T  27531385 atcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaa 27531451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 26802536 - 26802375
Alignment:
Q  18 gaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcat 117  Q
    ||||| |||||||||  |||||| |  ||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  26802536 gaagaggcatagttgatagaaaacacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcat 26802437  T
Q  118 tatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    | ||||| ||||| ||| | ||||||||||||||||||||||| |||||||| || ||||||    
T  26802436 tgtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaa 26802375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 27611092 - 27611256
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagat 114  Q
    |||||||| |||||||||  |||||| |  |||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||  |||||    
T  27611092 gaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagat 27611191  T
Q  115 cattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||| ||||| ||||| ||| | |||||||||||| |||||||||| |||||||| |||||||||    
T  27611192 cattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaa 27611256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 27724935 - 27725099
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagat 114  Q
    |||||| | |||||||||  |||||| |  |||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||| |||||    
T  27724935 gaagaataggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagat 27725034  T
Q  115 cattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||| ||||| ||||| ||| | |||||||||||| |||||||||| |||||||| |||||||||    
T  27725035 cattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaa 27725099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 28781227 - 28781072
Alignment:
Q  24 gcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcat 123  Q
    |||||||||  |||||| |  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||    
T  28781227 gcatagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcat 28781128  T
Q  124 ccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    | ||||| ||    |||||||||||| |||||||||| |||||||| |||||||||    
T  28781127 caatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaa 28781072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 28786345 - 28786211
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||    |||||||    
T  28786345 ggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattccct 28786246  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||||| |||||||||| |||||||| |||||||||    
T  28786245 tgtcagtaagagccttgtagagatttccggtaaaa 28786211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 28792466 - 28792332
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||    |||||||    
T  28792466 ggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattccct 28792367  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||||| |||||||||| |||||||| |||||||||    
T  28792366 tgtcagtaagagccttgtagagatttccggtaaaa 28792332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 27604795 - 27604959
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagat 114  Q
    |||||||| ||||| |||  |||||| |  |||||||||||||| ||||| || |||||||||| ||||| ||||||||||||||||||||||  |||||    
T  27604795 gaagaagaggcatatttgatagaaaacacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagat 27604894  T
Q  115 cattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    |||| ||||| ||||| ||| |||||||||||||| |||||||||| |||||||| |||||||||    
T  27604895 cattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaa 27604959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 26884262 - 26884106
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||  |||||||||||||||||   |||||||  |||    
T  26884262 atgaagaagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaag 26884163  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagatt 169  Q
    || ||||||||| ||||| ||  | |||||||||| | |||||||||| ||||||||    
T  26884162 atgattatcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatt 26884106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 26646574 - 26646423
Alignment:
Q  17 agaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatca 116  Q
    |||||| |||||||||  |||||| |  ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| | |||||||    
T  26646574 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatca 26646475  T
Q  117 ttatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
      |||||| ||||| ||  |||||||||||||| |||||||||| |||||||    
T  26646474 caatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagat 26646423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 26752542 - 26752391
Alignment:
Q  17 agaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatca 116  Q
    |||||| |||||||||  |||||| |  ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| | |||||||    
T  26752542 agaagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatca 26752443  T
Q  117 ttatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
      |||||| ||||| ||  |||||||||||||| |||||||||| |||||||    
T  26752442 caatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagat 26752391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 27679045 - 27678883
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||    
T  27679045 atgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaag 27678946  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    | |||| | ||| ||||| ||    |||||||||||| |||||||||| |||||||| |||||    
T  27678945 accattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggt 27678883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 31284382 - 31284225
Alignment:
Q  18 gaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcat 117  Q
    ||||| ||||||||||||||||| | ||| |||||||||||||| ||||| ||||| ||| | |||||||||||||||||||| ||||||| ||| |||     
T  31284382 gaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcattgtcgagtgatggtgtgatttcatcccctctttgaagttcac 31284283  T
Q  118 tatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    ||||||| ||||| ||  | |||||||||||| |||||||||| |||||||| |||||    
T  31284282 tatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggt 31284225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 27593110 - 27593270
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagat 114  Q
    |||||||| |||||||||  |||||| |  ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||| ||||     
T  27593110 gaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagac 27593209  T
Q  115 cattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    |||| ||||| ||||| ||    |||||||||||| |||||||||| |||||||| |||||    
T  27593210 cattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggt 27593270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 26861715 - 26861549
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||| ||||| ||||||||||||||||| |  ||||| ||||| ||||| ||||| ||||| ||| | ||||||  | |||||||||| ||||||| |||    
T  26861715 atgacgaagaggcatagttggcagaaaacacaggaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaag 26861616  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
     |||  |||||||||||| ||  |||||||||||||| |||||||||| ||||||||||||||||||    
T  26861615 ttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaa 26861549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 26623075 - 26622919
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||| |||||||||||| |||||| |  ||||||||||||||||| |||||||| || ||| ||||||||||| ||||||| || ||||||| |||    
T  26623075 atgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaag 26622976  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagatt 169  Q
     |||  |||||| ||||| ||  | |||||||||||| |||||||||| ||||||||    
T  26622975 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatt 26622919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 26729053 - 26728897
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||| |||||||||||| |||||| |  ||||||||||||||||| |||||||| || ||| ||||||||||| ||||||| || ||||||| |||    
T  26729053 atgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaag 26728954  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagatt 169  Q
     |||  |||||| ||||| ||  | |||||||||||| |||||||||| ||||||||    
T  26728953 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatt 26728897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 27677702 - 27677864
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  | ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||| |||    
T  27677702 atgaagaagaggcatagttgatagaaaacacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaag 27677801  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
     |||| ||  || ||||| ||  | ||||||||||||  ||||||||| |||||||| |||||    
T  27677802 ttcatgattgtcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggt 27677864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 27706490 - 27706646
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||| ||  |||||| |  ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| | ||||| |||    
T  27706490 atgaagaagaggcataggtgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccttctttgaag 27706589  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagatt 169  Q
     |||| ||  || ||||| ||  | ||||||||||||  || |||||| ||||||||    
T  27706590 ttcatgattgtcaatgaaggtgtggattcccttgtcatcaaaagccttgtagagatt 27706646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 27427692 - 27427748
Alignment:
Q  11 agatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttc 67  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  27427692 agatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttc 27427748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 25507029 - 25507092
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctcttt 108  Q
    ||||||||||||||||||||||| |||||  |||| | ||||||||||||||||||||||||||    
T  25507029 ggaataaaaatcctagattcttcaatggcgatgacgactgatggtgtgatttcatctcctcttt 25507092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 28181213 - 28181047
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| ||||| |||  ||| || | |||||| ||||||||||| ||||| |||||||||| |||||||| ||| ||||| || |||| || |||    
T  28181213 atgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaag 28181114  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
     ||  | ||||||||||| || || ||||||||||||  ||||||  ||| |||||| || ||||||    
T  28181113 ctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaa 28181047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 28185465 - 28185299
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| ||||| |||  ||| || | |||||| ||||||||||| ||||| |||||||||| |||||||| ||| ||||| || |||| || |||    
T  28185465 atgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaag 28185366  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
     ||  | ||||||||||| || || ||||||||||||  ||||||  ||| |||||| || ||||||    
T  28185365 ctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaa 28185299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 28234631 - 28234497
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    ||||| ||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||| ||  | ||||| ||||| ||  | |||||||    
T  28234631 ggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattccct 28234532  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||| |  ||||||  ||||||||||  ||||||||    
T  28234531 tgtgacaaagagctctatagagattttcggtaaaa 28234497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 26823939 - 26823774
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| ||||||||||||||||| |  ||||||||||||||||| ||||| ||||| ||    |||||| ||  ||||| ||| ||||||| |||    
T  26823939 atgaagaagaggcatagttggcagaaaacacaggaataaaaatcctagactcttcaatggcattattgagtgattgttcgattttatcccctctttgaag 26823840  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaa 178  Q
     |||  |||||| |  || ||  | |||||||||||  |||||||||| |||||||| ||||||||    
T  26823839 ttcacgatcatcaaaaaaggtgtggattcccttgtctgtaagagccttgtagagattgccggtaaa 26823774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 29826085 - 29825960
Alignment:
Q  54 atcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattcccttgtcaataa 153  Q
    |||||||||||||  || ||||| |||||||| ||||||||||| || ||||||| ||| || || ||||| ||||| || ||||||  ||||||| | |    
T  29826085 atcctagattcttgaattgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtgcgaattttcttgtcagtta 29825986  T
Q  154 gagccttatagagattaccggtaaaa 179  Q
    |||| || |||||||| |||||||||    
T  29825985 gagctttgtagagattgccggtaaaa 29825960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 28325578 - 28325452
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagat 114  Q
    |||||||| ||||| |||  ||| || || ||||| ||||||||||| ||||| |||||||||| |||||| ||||| ||||| || |||| || ||| |    
T  28325578 gaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggt 28325479  T
Q  115 cattatcatccatgaaagtacgaattc 141  Q
    | || ||||| ||||| ||||||||||    
T  28325478 ctttgtcatcaatgaaggtacgaattc 28325452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 28227017 - 28226957
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctc 105  Q
    ||||| ||||||||||||||||| ||| |||||| |||||||| ||| |||||||| ||||    
T  28227017 ggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctc 28226957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 27427810 - 27427853
Alignment:
Q  132 gtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  27427810 gtacgaattcccttgtcaataagagccttcaagagattgccggt 27427853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 28242871 - 28242820
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgattt 96  Q
    ||||| ||||||||||| ||||| |||||||||| |||||||||||| ||||    
T  28242871 ggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattt 28242820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 26937143 - 26937101
Alignment:
Q  63 tcttcgatggccttgacaagtgatggtgtgatttcatctcctc 105  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  26937143 tcttcaattgccttgacaagtgatggtgtgatttcttctcctc 26937101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 26949692 - 26949598
Alignment:
Q  81 agtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    ||||| ||||||||||| || ||| | | ||| || |||||||| ||||| || || ||||||||||||   ||||| |||||||||||||||||    
T  26949692 agtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaaggttcggattcccttgtcagagagagctttatagagattaccggt 26949598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 28098489 - 28098539
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatt 95  Q
    ||||| |||||||| || |||||||||||||||||||| ||| ||||||||    
T  28098489 ggaattaaaatcctggactcttcgatggccttgacaagggattgtgtgatt 28098539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 26342024 - 26342105
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgattt 96  Q
    |||||||| |||||||||   || || || ||||| |||||||| || ||||| ||||| |||||||||||| |||||||||    
T  26342024 gaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaatggctttgacaagtgattgtgtgattt 26342105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 28150036 - 28149920
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| | |||||||  ||| || || ||||| |||||||| || ||||| |||||||||| | |||||||||||||||| || |||| || |||    
T  28150036 atgaagaagaagtatagttgatagagaagattggaatgaaaatcctggactcttcaatggccttgaga-gtgatggtgtgatttcgtcccctcgttaaag 28149938  T
Q  113 atcattatcatccatgaa 130  Q
     ||  ||||||| |||||    
T  28149937 ctccgtatcatcaatgaa 28149920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 28297801 - 28297933
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| ||||| |||| ||| || |  ||||| ||||||||||  ||||| |||  ||||| |||||||||||| ||||| || |||| || |||    
T  28297801 atgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaag 28297900  T
Q  113 atcattatcatccatgaaagtacgaattccctt 145  Q
     ||  | ||||| ||||| || |||||||||||    
T  28297901 ctctctgtcatcaatgaaggtgcgaattccctt 28297933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 28514272 - 28514140
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| ||||| |||| ||| || |  ||||| ||||||||||  ||||| |||  ||||| |||||||||||| ||||| || |||| || |||    
T  28514272 atgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaag 28514173  T
Q  113 atcattatcatccatgaaagtacgaattccctt 145  Q
     ||  | ||||| ||||| || |||||||||||    
T  28514172 ctctctgtcatcaatgaaggtgcgaattccctt 28514140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 29697477 - 29697577
Alignment:
Q  75 ttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccgg 174  Q
    |||| |||||||||||||||||| || ||| ||| ||| || ||  ||||||||||||| |||| ||| ||||||  |||||| || | ||||| |||||    
T  29697477 ttgagaagtgatggtgtgatttcttcgccttttttaagctccttggcatccatgaaagttcgaactcctttgtcatcaagagctttcttgagataaccgg 29697576  T
Q  175 t 175  Q
    |    
T  29697577 t 29697577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 3509 - 3676
Alignment:
Q  13 atgaagaagatgcatag-ttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaa 111  Q
    |||||||||| |||||| |||  |||||| |  |||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||| ||    
T  3509 atgaagaagaggcataggttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaa 3608  T
Q  112 gatcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||||||| ||||| ||||| ||| | |||||||||||| |||||||||| |||||||| |||||||||    
T  3609 gatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaa 3676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 14454 - 14609
Alignment:
Q  24 gcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcat 123  Q
    |||||||||  |||||| |  |||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||    
T  14454 gcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcat 14553  T
Q  124 ccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
    | ||||| ||| | |||||||||||| |||||||||| |||||||| |||||||||    
T  14554 caatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaa 14609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 37 - 171
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||    |||||||    
T  37 ggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattccct 136  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||||| |||||||||| |||||||| |||||||||    
T  137 tgtcagtaagagccttgtagagattgccggtaaaa 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 7592 - 7458
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||    |||||||    
T  7592 ggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattccct 7493  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||||| |||||||||| |||||||| |||||||||    
T  7492 tgtcagtaagagccttgtagagattgccggtaaaa 7458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 13752 - 13886
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||    |||||||    
T  13752 ggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattccct 13851  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||||| |||||||||| |||||||| |||||||||    
T  13852 tgtcagtaagagccttgtagagattgccggtaaaa 13886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 4791 - 4925
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    |||||||||||||||||||| || |||||||||   || ||||||||||||||||||||||||| ||||||||| ||||| ||||| ||    |||||||    
T  4791 ggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattccct 4890  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||||| |||||||||| |||||||| |||||||||    
T  4891 tgtcagtaagagccttgtagagatttccggtaaaa 4925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 8e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 268432 - 268587
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  ||||||||||||||||| ||||| ||||| ||| | ||||||||| |||||||||| ||||||| |||    
T  268432 atgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgaag 268531  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
     |||  |||||| ||||| ||  | |||||||||||| |||||||||| |||||||    
T  268532 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagat 268587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 28127754 - 28127910
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtga-tttcatctcctctttcaa 111  Q
    |||||||||| |||||||||| ||||||||  ||||||||||| ||||||||||| |||||||| | |||||| ||||||| |||  |||||||| ||||    
T  28127754 atgaagaagaggcatagttggtagaaaatacaggaataaaaattctagattcttcaatggcctttaaaagtgacggtgtgatttttttctcctctctcaa 28127853  T
Q  112 gatcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
    ||| |  |||||| ||||| ||  | ||||||||||||  ||| ||||| |||||||    
T  28127854 gattacaatcatcaatgaatgtgtggattcccttgtcataaagggccttgtagagat 28127910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 28164437 - 28164592
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  ||| || |  ||||||||||| | ||||| ||| ||||||||||  | ||| ||||||||||| |||||||| |||||    
T  28164437 atgaagaagaggcatagttgatagataacacaggaataaaaattcaagatttttcaatggccttgatgaatgacggtgtgatttcttctcctctctcaag 28164536  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
    ||||  |||||| ||||| ||  |||||||||||||   ||| |||||||||||||    
T  28164537 atcacaatcatcaatgaatgtgtgaattcccttgtcgtcaagggccttatagagat 28164592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 59671 - 59615
Alignment:
Q  11 agatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttc 67  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  59671 agatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttc 59615  T

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Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 59553 - 59510
Alignment:
Q  132 gtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  59553 gtacgaattcccttgtcaataagagccttcaagagattgccggt 59510  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 17989126 - 17989182
Alignment:
Q  11 agatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttc 67  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17989126 agatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttc 17989182  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 18073863 - 18073807
Alignment:
Q  11 agatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttc 67  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  18073863 agatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttc 18073807  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 18724160 - 18724326
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  ||||| || |||||||| ||||| ||||| ||| | ||||||||| |||||||||| |||||||  ||    
T  18724160 atgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcag 18724259  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
     |||   ||||| ||||| ||  | |||||||||||| |||||||||| ||||||| ||| ||||||    
T  18724260 gtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaa 18724326  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 18731579 - 18731723
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  ||||| || |||||||| ||||| ||||| ||| | ||||||||| |||||||||| |||||||  ||    
T  18731579 atgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcag 18731678  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagc 157  Q
     |||   ||||| ||||| ||  | |||||||||||| |||||||    
T  18731679 gtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagc 18731723  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 18655552 - 18655707
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  |||||||| |||||||| ||||  ||||| ||| | ||||||||| |||||||||| || ||||  ||    
T  18655552 atgaagaagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttgatttcatccccactttgcag 18655651  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
     |||   ||||| ||||| ||  | |||||||||||| ||||||| || |||||||    
T  18655652 ctcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagat 18655707  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 18699475 - 18699630
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  ||||| || |||||||| ||||| ||||| ||| | ||||||||| |||||||||| || ||||  ||    
T  18699475 atgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcag 18699574  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
     |||   ||||| ||||| ||  | |||||||||||| ||||||| || |||||||    
T  18699575 gtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagat 18699630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 17989244 - 17989287
Alignment:
Q  132 gtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  17989244 gtacgaattcccttgtcaataagagccttcaagagattgccggt 17989287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 18073745 - 18073702
Alignment:
Q  132 gtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  18073745 gtacgaattcccttgtcaataagagccttcaagagattgccggt 18073702  T

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Target: scaffold0019 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 58370 - 58536
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  ||| || | |||||| ||||||||||| ||||  |||||||||| |||||||||||| ||||| || |||| || |||    
T  58370 atgaagaagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagtgatggtgttatttcgtcacctccttgaag 58469  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggtaaaa 179  Q
     ||  | ||||||||||| || || ||||||||||||  ||||||  | |||||||| || ||||||    
T  58470 ctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaa 58536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 29273858 - 29274013
Alignment:
Q  13 atgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaag 112  Q
    |||||||||| |||||||||  |||||| |  ||||||||||| ||||| ||||| ||| | ||| | ||||||| | |||||||||| ||||||| |||    
T  29273858 atgaagaagaggcatagttgatagaaaacacaggaataaaaattctagactcttcaatgacattgtcgagtgatgatttgatttcatcccctctttgaag 29273957  T
Q  113 atcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagat 168  Q
     |||  |||||| ||||| ||  | |||||||||||| |||||| ||| |||||||    
T  29273958 ttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagtcttgtagagat 29274013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 34792 - 34658
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattccct 144  Q
    ||||| ||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| || ||| ||  | ||||| ||||| ||  | |||||||    
T  34792 ggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattccct 34693  T
Q  145 tgtcaataagagccttatagagattaccggtaaaa 179  Q
    ||| |  ||||||  ||||||||||  ||||||||    
T  34692 tgtgacaaagagctctatagagattttcggtaaaa 34658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 116893 - 116767
Alignment:
Q  15 gaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctctttcaagat 114  Q
    |||||||| ||||| |||  ||| || || ||||| ||||||||||| ||||| |||||||||| |||||| ||||| ||||| || |||| || ||| |    
T  116893 gaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggt 116794  T
Q  115 cattatcatccatgaaagtacgaattc 141  Q
    | || ||||| ||||| ||||||||||    
T  116793 ctttgtcatcaatgaaggtacgaattc 116767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 27515 - 27455
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctc 105  Q
    ||||| ||||||||||||||||| ||| |||||| |||||||| ||| |||||||| ||||    
T  27515 ggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctc 27455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 43033 - 42982
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgattt 96  Q
    ||||| ||||||||||| ||||| |||||||||| |||||||||||| ||||    
T  43033 ggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattt 42982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 3279755 - 3279695
Alignment:
Q  45 ggaataaaaatcctagattcttcgatggccttgacaagtgatggtgtgatttcatctcctc 105  Q
    |||||||||||| | || |||||||||||||||||||||||| ||||||||||||| ||||    
T  3279755 ggaataaaaatcatggactcttcgatggccttgacaagtgattgtgtgatttcatcacctc 3279695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 17993846 - 17993934
Alignment:
Q  87 ggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattcccttgtcaataagagccttatagagattaccggt 175  Q
    |||||||||||||| ||||| | ||| || || ||||| ||||| || |||||||||||||||  |||||| |||||||||||||||||    
T  17993846 ggtgtgatttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggt 17993934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 241831 - 241905
Alignment:
Q  75 ttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatccatgaaagtacgaattcccttgtca 149  Q
    |||| |||||||||||||||||| || ||| ||  ||| || || |||||||||||||| |||||||| ||||||    
T  241831 ttgagaagtgatggtgtgatttcttcaccttttctaagctccttgtcatccatgaaagttcgaattcctttgtca 241905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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