View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_low_9 (Length: 543)
Name: NF15659_low_9
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Complemental strand, 36453752 - 36453256
Alignment:
| Q |
16 |
gttttctcaactaatttaaatgcgagctcattttctaatttttccctacaacgtttgataagtattatatacattgataatgaattgaacatcttacagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
36453752 |
gttttctcaactaatttaaatgcgagctcattttctaaattttccctacaacgtttgataagtattatatacattgataatgaacataacatcttgcagc |
36453653 |
T |
|
| Q |
116 |
acataatcatnnnnnnntggactgaaagatattctctagacttaagttaattggaagtatataacttctgattagagtggcaccattttaatgtaggcat |
215 |
Q |
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| T |
36453652 |
acataatcataaaaaaatggactgaaagatattctctaga---------attggaagtatataacttctgattagagtggaaccattttaatgtaggcat |
36453562 |
T |
|
| Q |
216 |
gaatgaccagccactgatttaaaaagaaaaaggggcgttacttaataaacactccacatatttattcattcattcaacccttacaca-cacata-ttttt |
313 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
36453561 |
gaatgaccagccactaattgaaaaagaaaaaggggcgttacttaataaacactccacgtatttattcattcattcaacccttacacaccacatatttttt |
36453462 |
T |
|
| Q |
314 |
tactctttaaccagtacagaaaggtagggaaccatatatgtgcctatgccatgatacacagttccatacactaggaaggcaaccatatatactaattcat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| | |||| |
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| T |
36453461 |
tactctttaaccagtacagaaaggtagggaaccatataggtgcctatgccatgatacatagttccatacactag------ttccat--------aatcat |
36453376 |
T |
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| Q |
414 |
atataactaaaacttgatgacctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaatt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36453375 |
atataactaaaacttgatgacctgaaacgtgaaaagtgttattattgatggaaaataactccatataattcatactatctagcaaggtagctaattaatt |
36453276 |
T |
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