View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15660_low_1 (Length: 678)

Name: NF15660_low_1
Description: NF15660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15660_low_1
NF15660_low_1
[»] chr1 (1 HSPs)
chr1 (19-664)||(50870132-50870800)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 664
Target Start/End: Original strand, 50870132 - 50870800
Alignment:
Q  19 tttctgtcatttacattactagcctgtacaagggacaacacacacttaacaaatggccacacatgtaaatgtatgtgtctcgaaaacatgttcacatgaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||             |||||  |||||||||||| ||||||||||||||||||    
T  50870132 tttctgtcatttacattactagcctgtacaagggacaacacacatgtaa-------------atgta--tgtatgtgtctccaaaacatgttcacatgaa 50870216  T
Q  119 aa-tccacatttttatgagtattatccataataaattgtttttggcagtaaaaatatttaaatatggtgagtc----------aaatacaaaaaagattg 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||          |||||||||||||||||    
T  50870217 aaatccacatttttatgagtattatccataataaattgtttttggcagtaaaaatatttaaatgtggtgagtcaaacacagtcaaatacaaaaaagattg 50870316  T
Q  208 tttacttggatggtattgttcgtataacttgtacaatagtacatgctactactaaaaattgaatggaaacagaaaatgcattgtaattaaaagaagtatt 307  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50870317 tttacttggatggtattgttcgtataacttgtaccatagtacatgctactactaaaaattgaatggaaacagaaaatgcattgtaattaaaagaagtatt 50870416  T
Q  308 gaccgtagaaattgcagaaaaggacaaatgtaaatttccaattccaaatgaaaaagtcatattccaataattaggcaatggaccaggaccaggaccagtg 407  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    |||||||||||||||    
T  50870417 gaccgtagaaattgcacaaaaggacaaatgtaaatttccaattccaaatgaaaaagtcatattccaataattaggca--ggcaatggaccaggaccagtg 50870514  T
Q  408 aatgtcaaataaaagttagaagtcacaatatgagcctttctttcggtcacaatgcaaacaaaccatgataaattttggacaatgaaagaaaagaaaagca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50870515 aatgtcaaataaaagttagaagtcacaatatgagcctttctttcggtcacaatgcaaacaaaccatgataaattttggacaatgaaagaaaagaaaagca 50870614  T
Q  508 ctctaattcctaaccaatatactctatataaaatctaaccacttcttaggccccgat------------taaataaataaatgtttgtatatttatgttg 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||    
T  50870615 ctctaattcctaaccaatatactctatataaaatctaaccacttcttaggccccgattaaataaataaataaataaataaatgtttgtatatttatgttg 50870714  T
Q  596 -----------------attaattttagcgtgttgattctgcgtttcaaacgtggttttcaaaaaaccaactccgtggagaataat 664  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50870715 acaactttacacttaaaattaattttagcgtgttgattctgcgtttcaaacgtggttttcaaaaaaccaactccgtggagaataat 50870800  T

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