View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15660_low_2 (Length: 611)
Name: NF15660_low_2
Description: NF15660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15660_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 23 - 603
Target Start/End: Original strand, 35364123 - 35364703
Alignment:
| Q |
23 |
ctccctctgattcataatggaaggaaaaattataggaacacgttcaacaaacaccaatcttttgttatccctcattaaatcattcattgatcacaatgta |
122 |
Q |
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| T |
35364123 |
ctccctctgattcataatgggaggaaaaactataggaacacgttcaacaaacactaatcttttgttatccctcattaaatcagtcattgatcacaatgta |
35364222 |
T |
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| Q |
123 |
taaccatgcatttaatgatagcaaggacgggaaatctttgttgattggggttaagcaatcgcttaacctaataagctttattaataagagataagagaag |
222 |
Q |
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| T |
35364223 |
taaccatgcatttaatgatagcaaggacgggaaatctttgttgattggggttaagcaatcgcttaacctaataagctttattaataagagataagagaag |
35364322 |
T |
|
| Q |
223 |
tgaagagataagatatggtaacacataatagtagacatattgtaacttaattaatccctcagagaaatatctagaaaactaacagtacaatgtatgaatc |
322 |
Q |
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| T |
35364323 |
agaagagataagatatggtaacacatactagtagacatattgtaacttaattaatccctcagagaaatatctagaaaactaatagtacaatgcatgaatc |
35364422 |
T |
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| Q |
323 |
aaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaagcttt |
422 |
Q |
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| T |
35364423 |
aaaccatgggatccatggccagaacagtgctaagattcatagggtacatatactcattggagccattcaagatttgttggactatgattctgcaagcttt |
35364522 |
T |
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| Q |
423 |
ttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatac |
522 |
Q |
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| T |
35364523 |
ttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatac |
35364622 |
T |
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| Q |
523 |
tcacaacaagctttctttgatgtaacaaatcctgttcaccaataattcgttgtaagttagaaaataattacgaaacccttt |
603 |
Q |
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| T |
35364623 |
tcacaacaagctttctttgatgtaacaaatcctgttcaccaataattcgttgtaagttagaaaataattatgaaacccttt |
35364703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 276 - 558
Target Start/End: Original strand, 35376140 - 35376422
Alignment:
| Q |
276 |
atccctcagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatac |
375 |
Q |
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| T |
35376140 |
atccctgagagaaatgtctaaaaaactaatagtgcaatgcatgaatcaaactatgggatccatggcgagaacagtgcttagattcatagggtacatatac |
35376239 |
T |
|
| Q |
376 |
tcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcaca |
475 |
Q |
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| T |
35376240 |
tcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcaca |
35376339 |
T |
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| Q |
476 |
agtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgtt |
558 |
Q |
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| T |
35376340 |
agtttgaaaggggtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgtt |
35376422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 318 - 558
Target Start/End: Original strand, 35357627 - 35357867
Alignment:
| Q |
318 |
gaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaa |
417 |
Q |
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| T |
35357627 |
gaatcaaaccatggaatccatggcgagaacagtgctaagattcatagggttcatatacaggttggatccaatgaacatctgttggactatgattctgcta |
35357726 |
T |
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| Q |
418 |
gctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggc |
517 |
Q |
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| T |
35357727 |
gctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttgaaataggtgtacacagtccaatcccgttgaatcgcc |
35357826 |
T |
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| Q |
518 |
catactcacaacaagctttctttgatgtaacaaatcctgtt |
558 |
Q |
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| T |
35357827 |
cttgaccacaacaagcatcctttgctgtaacaaatcctgtt |
35357867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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