View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15660_low_3 (Length: 570)
Name: NF15660_low_3
Description: NF15660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15660_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 2 - 557
Target Start/End: Complemental strand, 40801341 - 40800785
Alignment:
| Q |
2 |
ttgatggcagttactccacactgacaccaattttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801341 |
ttgatggcagttactccacattgacaccaattttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagt |
40801242 |
T |
|
| Q |
102 |
agatgtacaaagttaccatgttgcaacagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttccc |
201 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801241 |
agatgtacaaagttaccatgttgtaacagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttccc |
40801142 |
T |
|
| Q |
202 |
aattactgatacataaccaccttttatgttaaaggaagtttgatatttattgagcatcaaacatacctgaaaacttcaaacatcttaaaaccatattttc |
301 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||| | |
|
|
| T |
40801141 |
aattactgatacgtaaccaccttttatgttaaaggaagttagatatttattgagcatcaaatatacttgaaaacttcaagcatctttaaaccatatttac |
40801042 |
T |
|
| Q |
302 |
taatatgtaaccatcttcctttcctcttcgtcgtttcctttcaccctttgggacaattatcgaataaggactcaaatcacatgcaaacaacaacataaaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801041 |
taatatgtaaccatcttcctttcctcttcgtcgtttcctttcaccctttgcgacaattatggaataaggactcaaatcacatgcaaacaacaacataaaa |
40800942 |
T |
|
| Q |
402 |
ggattagaaagagaccgagagataatatggagaaaaatttggcaatcatcctatatatgaggagcttctctatcaatgcggaacatttcccattatatct |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40800941 |
ggattagaaagagaccgagagataatatggagaaaaatttggcagtcatcctatatatgaggagcttctctatcaatgcggaacatttcccattatatct |
40800842 |
T |
|
| Q |
502 |
gaatttgtattaaccaagaagagtaaataggaaatagaatacaaaaa-agttcttca |
557 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
40800841 |
gaatttgtattaaccaagaagagtaaaaaggaaatagaatacaaaaacagttcttca |
40800785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 18701639 - 18701846
Alignment:
| Q |
5 |
atggcagttactccacactgacaccaattttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtaga |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701639 |
atggcagttactccacattgacaccaattttcactctttaaggttgtttctccaacgtaaattaatgtaacagttgtaatgtaaaattgaaaggagtaga |
18701738 |
T |
|
| Q |
105 |
tgtacaaagttaccatgttgcaacagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaat |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701739 |
tgtacaaagttaccatgttgcaaaagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaat |
18701838 |
T |
|
| Q |
205 |
tactgata |
212 |
Q |
| |
|
|||||||| |
|
|
| T |
18701839 |
tactgata |
18701846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 2248740 - 2248833
Alignment:
| Q |
23 |
tgacaccaattttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagtta |
116 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||||||| |
|
|
| T |
2248740 |
tgactccaatttccacactttaaggttgtttctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaagtagtaaatgtacaaagtta |
2248833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 14138535 - 14138413
Alignment:
| Q |
51 |
tttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgcaacagtgatgctaacttaccaaatt |
150 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||| || ||||| |||| || || |||||||||||| ||||||| ||| | |||| ||||||| | |
|
|
| T |
14138535 |
tttctccaacctaaaata-tgtaacagttgtaaggtaacatagaaagtagtaaatttagaaagttaccatgctgcaacaatgaaggtaacataccaaagt |
14138437 |
T |
|
| Q |
151 |
tggagaaatcaaataaaatattat |
174 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
14138436 |
tggagaaattaaataaaagattat |
14138413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 2248968 - 2249080
Alignment:
| Q |
289 |
aaaccatattttctaatatgtaaccatcttcctttcctcttcgtcgtttcctttcaccctttgggacaattatcgaataaggactcaaatcacatgcaaa |
388 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||| ||| ||||||||||| ||||| | | |
|
|
| T |
2248968 |
aaaccatatttactgatatgtaactgccttcctttcctcttcgt-gtctcctttcaccctttgcaacaattatgaaattaggactcaaatgacatggaga |
2249066 |
T |
|
| Q |
389 |
caacaacataaaag |
402 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2249067 |
aaacaacataaaag |
2249080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 544
Target Start/End: Original strand, 2249317 - 2249394
Alignment:
| Q |
467 |
ttctctatcaatgcggaacatttcccattatatctgaatttgtattaaccaagaagagtaaataggaaatagaataca |
544 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||| |||||| |||||||| ||||||||| ||| |||||||| |||| |
|
|
| T |
2249317 |
ttctatataaatgcggaacattttccattatatcagaatttatattaaccgagaagagtagataagaaatagagtaca |
2249394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 2248911 - 2248971
Alignment:
| Q |
204 |
ttactgatacataaccaccttttatgttaaaggaa-gtttgatatttattgagcatcaaac |
263 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
2248911 |
ttactgatacgtaaccacctttttcgttaaacgaaagttagatatttattgagcatcaaac |
2248971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 24866786 - 24866879
Alignment:
| Q |
23 |
tgacaccaattttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagtta |
116 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| ||||||||||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||||||| |
|
|
| T |
24866786 |
tgacaccaatttctactctttcaggctgtatctccaacctaaaataatgtaacagttgtaaggtaaaatagaaagtagtaaatgtacaaagtta |
24866879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 17882724 - 17882624
Alignment:
| Q |
26 |
caccaattttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgc |
125 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | |||| ||||||||||||||||| ||||||| |||| |||| ||||||| |||||||||| ||| |
|
|
| T |
17882724 |
caccaatttcccctctttaaggttgtttctcca-cgtaaaataatgtaacagttgtaaggtaaaataaaaagaagtaaatgtacacagttaccatgctgc |
17882626 |
T |
|
| Q |
126 |
aa |
127 |
Q |
| |
|
|| |
|
|
| T |
17882625 |
aa |
17882624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 5461361 - 5461421
Alignment:
| Q |
51 |
tttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaa |
111 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||| ||||| | || |||||||| |
|
|
| T |
5461361 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
5461421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 402
Target Start/End: Complemental strand, 9813743 - 9813613
Alignment:
| Q |
269 |
tgaaaacttcaaacatcttaaaaccatattttctaatatgtaaccatcttcctttcctcttcgtcgtttcctttcaccctttgggacaattatcgaataa |
368 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| | |||||||||| |||||||| |||| | ||||||||||||| |||| |||||||| || | |
|
|
| T |
9813743 |
tgaaaacttcaagcatcttcaaaccatatttattgatatgtaaccgccttccttttctct---ttgtttcctttcaccgtttgcaacaattatgtaacta |
9813647 |
T |
|
| Q |
369 |
ggactcaaatcacatgcaaacaacaacataaaag |
402 |
Q |
| |
|
|||||||||| ||||| | | |||| |||||||| |
|
|
| T |
9813646 |
ggactcaaatgacatggagaaaacagcataaaag |
9813613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University