View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15660_low_4 (Length: 337)
Name: NF15660_low_4
Description: NF15660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15660_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 65 - 330
Target Start/End: Original strand, 34270437 - 34270702
Alignment:
| Q |
65 |
cataattactggattttaataaaatgattattatttaccgattcttgttctttgttgagacagataatttcaacttcgagccaagggtcatgtttatgca |
164 |
Q |
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| T |
34270437 |
cataattactgaattttaataaaatgattattatttaccgattcttgttctttgttgagacggataaggtcaacttcgagacaagggtcatgtttatgca |
34270536 |
T |
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| Q |
165 |
ataatttccacccctctgtttctttcaccgcttcgaaattattggtaactaacttgacacacctgaagtagagatttggtgcatcacaaagcttagccaa |
264 |
Q |
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| T |
34270537 |
ataatttccacccctctgtttctttcaccgcttcaaaattattggtaactaacttgacacacttgaagtagagatttggtgcatcacaaagcttagccaa |
34270636 |
T |
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| Q |
265 |
gtgcaacacgtccaccacattccctgtggtcatgaattggatcaagtcaacagtgcacctttgctt |
330 |
Q |
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| T |
34270637 |
gtgcaacacgtccaccacattccctgtggtcatgaattggatcaagtcaacagtgcacctttgctt |
34270702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 34270376 - 34270418
Alignment:
| Q |
3 |
tctcctctcttcttcctctgtttcacccaatcaccaacttatt |
45 |
Q |
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| T |
34270376 |
tctcctctcttcttcctctgtttcacccaatcaccaacttatt |
34270418 |
T |
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