View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15660_low_7 (Length: 204)

Name: NF15660_low_7
Description: NF15660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15660_low_7
NF15660_low_7
[»] chr5 (6 HSPs)
chr5 (16-185)||(1509850-1510019)
chr5 (107-185)||(1478736-1478814)
chr5 (107-185)||(1482930-1483008)
chr5 (107-165)||(1487427-1487485)
chr5 (107-183)||(1505716-1505792)
chr5 (107-185)||(1499977-1500055)
[»] chr2 (1 HSPs)
chr2 (107-185)||(24163097-24163175)
[»] chr1 (3 HSPs)
chr1 (107-183)||(44129313-44129389)
chr1 (111-183)||(44133518-44133590)
chr1 (113-183)||(44141940-44142010)
[»] chr7 (3 HSPs)
chr7 (107-183)||(46706295-46706371)
chr7 (107-183)||(5303235-5303311)
chr7 (107-183)||(5315850-5315926)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 1510019 - 1509850
Alignment:
Q  16 ataatacttaataaaaagtaaattatcaaagaatcttatatggctacaatgcaaagaacaactgtttcaatggtaagtctaggttcaaagcccccattca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  1510019 ataatacttaataaaaagtaaattatcaaagaatcttatatggctacactgcgaagaacaactgtttcaatggtaagtctaggtccaaagcccccattca 1509920  T
Q  116 agtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaata 185  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1509919 agtccttcaccaatggtcttaattccctcttgagctgatttctttctcatctcgtctaagatgaacaata 1509850  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 1478814 - 1478736
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaata 185  Q
    ||||| ||||| |||||| | ||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  1478814 ccccagtcaaggccttcacctgtggttttaagtccctcttgagccgatttctttctcatctcatccaagatgaacaata 1478736  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 1483008 - 1482930
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaata 185  Q
    ||||| ||||| |||||  | ||||||||||| ||||||||||  |||||||||| |||||| |||||||| |||||||    
T  1483008 ccccaatcaagcccttctcctgtggtcttaagcccctcttgagaagatttctttcgcatctcatctaagataaacaata 1482930  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 1487485 - 1487427
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcat 165  Q
    ||||||| |||||||||  | ||||||| ||||||||||||||||||| ||||||||||    
T  1487485 ccccatttaagtccttctcctgtggtctcaagtccctcttgagctgatctctttctcat 1487427  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 1505792 - 1505716
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaa 183  Q
    ||||||||| |||||||  | || ||||| | ||| ||||||||||||||||||||||| || |||||||| |||||    
T  1505792 ccccattcatgtccttctccggtagtcttcaatccatcttgagctgatttctttctcatttcatctaagataaacaa 1505716  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 1500055 - 1499977
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaata 185  Q
    ||||||||  |||||||| | |||||||||||||  |||||||  |||||| |||||||||| |  |||||||||||||    
T  1500055 ccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcattcaagatgaacaata 1499977  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 24163097 - 24163175
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaata 185  Q
    ||||||||||| |||||  | |||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||| ||||    
T  24163097 ccccattcaagcccttctcctgtggtctttagtccatcttgagccgatttgtttctcatctcatctaagatgaataata 24163175  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 44129389 - 44129313
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaa 183  Q
    ||||| |||||||||||  | |||||||| ||||| ||||||||||| ||||||||||| || |||||||| |||||    
T  44129389 ccccactcaagtccttctcccgtggtcttcagtccatcttgagctgacttctttctcatttcatctaagataaacaa 44129313  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 44133590 - 44133518
Alignment:
Q  111 attcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaa 183  Q
    |||||||||||||  | |||||||| | ||| ||||||||||| ||||||||||| || |||||||| |||||    
T  44133590 attcaagtccttctcctgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaa 44133518  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 44142010 - 44141940
Alignment:
Q  113 tcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaa 183  Q
    |||||||||||  | |||||||| | ||| ||||||||||| ||||||||||| || |||||||| |||||    
T  44142010 tcaagtccttctcccgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaa 44141940  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 46706295 - 46706371
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaa 183  Q
    |||||||||||||||||  | || ||||| || || ||||||| ||||||||||||||| || |||||||| |||||    
T  46706295 ccccattcaagtccttctcctgttgtcttcagaccatcttgagttgatttctttctcatttcatctaagataaacaa 46706371  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 5303311 - 5303235
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaa 183  Q
    |||||||||||||||||  |||| ||||| |  || |||| || ||||||||||||||| || |||||||| |||||    
T  5303311 ccccattcaagtccttctccagttgtcttcaacccatctttagttgatttctttctcatttcatctaagataaacaa 5303235  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 5315926 - 5315850
Alignment:
Q  107 ccccattcaagtccttcatcagtggtcttaagtccctcttgagctgatttctttctcatctcgtctaagatgaacaa 183  Q
    |||||||||||||||||  | || ||||| | ||| |||| || ||||||||||||||| || |||||||| |||||    
T  5315926 ccccattcaagtccttctcccgttgtcttcaatccgtctttagttgatttctttctcatttcatctaagataaacaa 5315850  T

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