View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15661_high_1 (Length: 429)
Name: NF15661_high_1
Description: NF15661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15661_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 42741668 - 42742064
Alignment:
| Q |
20 |
caagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctt-aacttcattacttccacatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42741668 |
caagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctttaacttcattacttccacatg |
42741767 |
T |
|
| Q |
119 |
ctagcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagcctattcttgtcaaacctaacttctaataattgtagct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741768 |
ctagcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagcctattcttgtcaaacctaacttctaataattgtagct |
42741867 |
T |
|
| Q |
219 |
ttgagtgttagatttggcataccttgaggttgagtatccttttccacgtcatgttattgaagtttctcctttctcattactgctgctagtgaaatccgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741868 |
ttgagtgttagatttggcataccttgaggttgagtatccttttccacgtcatgttattgaagtttctcctttctcattactgctgctagtgaaatccgaa |
42741967 |
T |
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| Q |
319 |
cctctccaccattgactgacactcccaaattgtcttcaaccgcattcttgtcctctattggcttattgaatttcttttgattttctcaatctccttt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741968 |
cctctccaccattgactgacactcccaaattgtcttcaaccgcattcttgtcctctattggcttattgaatttcttttgattttctcaatctccttt |
42742064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 21745788 - 21745918
Alignment:
| Q |
20 |
caagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745788 |
caagatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgc |
21745887 |
T |
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| Q |
120 |
tagcaacattgtttcaaaacttctcatcatt |
150 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21745888 |
tagcaacattgtttcaaaacttctcatcatt |
21745918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 4890685 - 4890721
Alignment:
| Q |
101 |
cttcattacttccacatgctagcaacattgtttcaaa |
137 |
Q |
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| T |
4890685 |
cttcattacttccacgtgctagcagcattgtttcaaa |
4890721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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