View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15661_high_3 (Length: 413)
Name: NF15661_high_3
Description: NF15661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15661_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 61 - 267
Target Start/End: Complemental strand, 2277943 - 2277737
Alignment:
| Q |
61 |
caaaaatagagaaatgctattctatataaccaaataatgttttagaattaaatgcaaaagcatgctattgctttctatcattgtactttttgcatgacac |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2277943 |
caaaaatagagaaatgctattctatataaccaaataatgttttagaattaaatgcaaaagcatactattgctttctatcattgtactttttgcatgacac |
2277844 |
T |
|
| Q |
161 |
aaacacatgcatgccaactttttcctgtgtaaaaccgtagccatgaatgaatgtttggtgatgttgagtaaatgcaattttctaaaccttactgtcagct |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2277843 |
aaacacatgcatgccaactttttcctgtgtaaaaccgtagccatgaatgaatgtttggtgatgttgagtaaatgcaattttctaaaccttactgtcagct |
2277744 |
T |
|
| Q |
261 |
gctttat |
267 |
Q |
| |
|
||||||| |
|
|
| T |
2277743 |
gctttat |
2277737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 263 - 399
Target Start/End: Complemental strand, 2277694 - 2277559
Alignment:
| Q |
263 |
tttatattgatcgtgatacatgatatatcttccaatatttttatcttatcgataattaatgtctcattataatgaaatatgtttannnnnnngaccgaaa |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2277694 |
tttatattgatcgtgatacatgatatatcttccaatatttt-atcttatcgataattaatgtctcattataatgaaatatgtttatttttttgaccgaaa |
2277596 |
T |
|
| Q |
363 |
aataaacaccagtatgttttaacttttaactcctttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2277595 |
aataaacaccagtatgttttaacttttaactcctttg |
2277559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2277979 - 2278049
Alignment:
| Q |
1 |
tctttgaccaaaccctaaacctataagttcaatgaacacaatcatctagtcggcgtacaacaaaaatagag |
71 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2277979 |
tctttgacctaaccctaaacctataagttcaatgaacacaatcatctagtcagcgtacaacaaaaatagag |
2278049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University