View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15661_high_5 (Length: 348)
Name: NF15661_high_5
Description: NF15661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15661_high_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 13219425 - 13219764
Alignment:
| Q |
1 |
aattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219425 |
aattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagca |
13219524 |
T |
|
| Q |
101 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219525 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcaggatttattatgacaggggcttttgctcatggagcgatattttttattc |
13219624 |
T |
|
| Q |
201 |
gcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttct |
300 |
Q |
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| T |
13219625 |
gggattacaatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttct |
13219724 |
T |
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| Q |
301 |
ggggttccatactttgggactttatgtccatgatgatgtc |
340 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
13219725 |
ggggttccatactttgggactttatgtccataatgatgtc |
13219764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
101 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
153 |
Q |
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| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
96 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
148 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
169 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
229 |
Q |
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|||||||||| ||||||||||||| |||||||| |||| ||||||||| ||||||||||| |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 10996338 - 10996673
Alignment:
| Q |
1 |
aattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
10996338 |
aattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttacctacttatgcgtttatagcg |
10996437 |
T |
|
| Q |
101 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattc |
200 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||| ||||| |||||||| |
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| T |
10996438 |
caagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgata-tttttattt |
10996536 |
T |
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| Q |
201 |
gcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttct |
300 |
Q |
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| T |
10996537 |
gagattacaatcccgaacataatgagaataatgtattggca--gatgttagagcacaaagaagctatcatatcccatttaagttgagccatcctatttct |
10996634 |
T |
|
| Q |
301 |
ggggttccatactttgggactttatgtccatgatgatgt |
339 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
10996635 |
agggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
112 |
tactcaagctgcgttatatactcatcatcaatacattgc |
150 |
Q |
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|||||||||||| ||||||| |||||||||||||||||| |
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| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 327
Target Start/End: Complemental strand, 238283 - 237958
Alignment:
| Q |
2 |
attcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcac |
101 |
Q |
| |
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||||||||||| ||||| ||||||||||| || |||||||| |||||||| || ||||||||||| ||||||||||| ||| ||||||| || ||||||| |
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| T |
238283 |
attcattttcagttaggtcttgctctagcttctttaggggttattacttccttagtagctcaacatatgtactctttacctccttatgcattcatagcac |
238184 |
T |
|
| Q |
102 |
aagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcg |
201 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||| ||||| || || || |||||||||||||||||||||||||| || ||||| ||| | |
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| T |
238183 |
aagactttactactcaagctgctttatatactcatcaccaatatattgcggggttcatcatgacaggggcttttgctcatggagctatttttttcattag |
238084 |
T |
|
| Q |
202 |
cgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctg |
301 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
238083 |
ggattacaatccggaacagaatgaggataatgtattggcaagaatgttagaccataaagaagctatcatatctcatttaagttgggctagcctctttcta |
237984 |
T |
|
| Q |
302 |
gggttccatactttgggactttatgt |
327 |
Q |
| |
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|| |||||||| ||||| |||||||| |
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| T |
237983 |
ggattccataccttgggcctttatgt |
237958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
112 |
tactcaagctgcgttatatactcatcatcaatacattgc |
150 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
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| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 32566683 - 32566650
Alignment:
| Q |
39 |
gggtcattacttctttggtagctcaacacatgta |
72 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
32566683 |
gggtcattacttctttggtagctcaatacatgta |
32566650 |
T |
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