View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15661_low_1 (Length: 617)
Name: NF15661_low_1
Description: NF15661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15661_low_1 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 13 - 599
Target Start/End: Complemental strand, 5299679 - 5299093
Alignment:
| Q |
13 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299679 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct |
5299580 |
T |
|
| Q |
113 |
acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5299579 |
acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtgtactgatccctttgagtctaggatcaa |
5299480 |
T |
|
| Q |
213 |
agaattgctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299479 |
agaattgctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaa |
5299380 |
T |
|
| Q |
313 |
gctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgaca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299379 |
gctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgaca |
5299280 |
T |
|
| Q |
413 |
tagatgctggcgatcgtgtaccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgca |
512 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5299279 |
tagatgctggcgaccgtgtaccaataatcagcatagtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgataca |
5299180 |
T |
|
| Q |
513 |
gaaacagtttgaactaaaagcctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaattttgcggtcatttca |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5299179 |
gaaacagtttgaactaaaagcctgggtctatgtttcggaaacttttaatgttgttggacttaccaaagcaattttacggtcatttca |
5299093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 599
Target Start/End: Complemental strand, 5251111 - 5250531
Alignment:
| Q |
19 |
aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacac |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | ||| |
|
|
| T |
5251111 |
aagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcac |
5251012 |
T |
|
| Q |
119 |
caaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaatt |
218 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| |||||||| |||||||| |
|
|
| T |
5251011 |
cactgaagaagctgaaagctgaatctcaaccttctactagcaaggtattcgacttcttttcatctttcactaatccatttgaatctaggattaaagaatt |
5250912 |
T |
|
| Q |
219 |
gctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaagcttta |
318 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||| | || || ||||| || || |||||||| |||||||| || |||||||| | ||| |
|
|
| T |
5250911 |
gctagagaagctagaatttcttgcaaagcaaaaggatatgctcggattgaaacatgaggcttttgctagtagtgaaggtggcgttagttggaaaccctta |
5250812 |
T |
|
| Q |
319 |
aaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatg |
418 |
Q |
| |
|
| ||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | |||||||| || |||||| | |
|
|
| T |
5250811 |
gatagatttccaactacagctttggtggatgaatcgagcatatatggtagagatggtgacaaggaggagttaattgattttttactgtctgacataaaca |
5250712 |
T |
|
| Q |
419 |
ctggcgatcgtgtaccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaaca |
518 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||||| || ||| ||||||| | || |
|
|
| T |
5250711 |
gtggcaatcatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagca |
5250612 |
T |
|
| Q |
519 |
gtttgaactaaaagcctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaattttgcggtcatttca |
599 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||||||||| || | |||||||| |
|
|
| T |
5250611 |
ttttgaacttaaagcttgggtctatgtttcagaaacttttgatgttgttggactcaccaaagcaattatgagctcatttca |
5250531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 37 - 597
Target Start/End: Complemental strand, 5268980 - 5268420
Alignment:
| Q |
37 |
tacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaag |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | |||||| ||||||| |||| |
|
|
| T |
5268980 |
tacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatacaccattgaagaagcagaaac |
5268881 |
T |
|
| Q |
137 |
ttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatt |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| || || ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5268880 |
ttgaatctcaaccttctactagcaaggtattcgacttcatttcgtctttcactaatccatttgagtctaggatcaaagaattgctagagaagctagaatt |
5268781 |
T |
|
| Q |
237 |
tctagcaaagcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtaca |
336 |
Q |
| |
|
||| ||||| |||||| ||||| | || ||||||||||| ||||||||||| |||||||| ||| |||||||| | ||| | |||||||||| |||| |
|
|
| T |
5268780 |
tcttgcaaaacaaaagcatatgcttggattaaaacaagacgcttgtgctagtagtgaaggtggagttagttggaaacccttagatagattgccaactaca |
5268681 |
T |
|
| Q |
337 |
tctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaa |
436 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||| |||||||| || |||||||| ||| | | |||||||| |
|
|
| T |
5268680 |
tctttggtggatgaatccagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacaagggcaaccatgtaccaa |
5268581 |
T |
|
| Q |
437 |
taatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctg |
536 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||| || | | ||| || | | ||| ||| |||||||| |
|
|
| T |
5268580 |
taatcagcatagtgggtctcggtggaatgggtaagaccacccttgctcaactcgtgtacaatgaccaaaggatcaaggagaattttaaacataaagcctg |
5268481 |
T |
|
| Q |
537 |
ggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaattttgcggtcattt |
597 |
Q |
| |
|
||||||||||||||||| ||| ||| | | |||||||| ||||||||| || |||||||| |
|
|
| T |
5268480 |
ggtctatgtttcggaaatttttgatggtctcggacttactaaagcaattctgaggtcattt |
5268420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 146 - 599
Target Start/End: Original strand, 4388151 - 4388604
Alignment:
| Q |
146 |
aaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatttctagcaaa |
245 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || | | |||| ||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
4388151 |
aaccttctactagcaaggtattcaacttcttttcatctttcattaatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaa |
4388250 |
T |
|
| Q |
246 |
gcaaaaggatatgttagggttaaaacaagaaatttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtg |
345 |
Q |
| |
|
||||||||||||| | || | |||||||| | |||||||||| |||||||| | || |||||||| | || | |||||| |||| ||||||||||||| |
|
|
| T |
4388251 |
gcaaaaggatatgctcggactgaaacaagacacctgtgctagtagtgaaggtggactcagttggaaacccttgataagatttccaactacatctttggtg |
4388350 |
T |
|
| Q |
346 |
gatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaataatcagca |
445 |
Q |
| |
|
|||| ||||||||||||||| ||| | |||||||||||||| || ||| |||||||| || |||||||| ||| | | |||||||||||||||| |
|
|
| T |
4388351 |
gatggatcgagcatatatggtagaaacggtgacaaagaggagttagtcaactttttactgtctgacatagacagcggcaaccaagtaccaataatcagca |
4388450 |
T |
|
| Q |
446 |
tggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctgggtctatgt |
545 |
Q |
| |
|
| |||||||| ||||||||||| || ||||| |||||||| |||||||||||| || || |||| | | || |||||||| ||||| |||||||| || |
|
|
| T |
4388451 |
tagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaatgaccgcaggatgaaagagcattttgaacttaaagcttgggtctacgt |
4388550 |
T |
|
| Q |
546 |
ttcggaaactttcaatgttgttggacttaccaaagcaattttgcggtcatttca |
599 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
4388551 |
ttcagaaacttttgatgttgttggacttaccaaagcaattctgaggtcatttca |
4388604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 6519663 - 6519815
Alignment:
| Q |
433 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
532 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| ||||||||||||||||||| ||| |||||| ||||||||| |||| || |||||||| |||| |
|
|
| T |
6519663 |
ccaataatcagcatagtgggtttaggaggaatgggtaaaaccacccttgctcaacatgtctacaatgacaacatgacaaagaagcattttgaacttaaag |
6519762 |
T |
|
| Q |
533 |
cctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaatt |
585 |
Q |
| |
|
| |||||||||||||| ||| |||| ||| ||||||||| |||||||||||| |
|
|
| T |
6519763 |
catgggtctatgtttcagaatcttttgatgatgttggactcaccaaagcaatt |
6519815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 279 - 585
Target Start/End: Complemental strand, 8455336 - 8455030
Alignment:
| Q |
279 |
ttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgac |
378 |
Q |
| |
|
||||||||| |||||||| |||| |||||||| ||| |||||| ||| || |||| || | |||||||| |||||||||||||| |||||| ||| |
|
|
| T |
8455336 |
ttgtgctaggaatgaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtcgagatgttgat |
8455237 |
T |
|
| Q |
379 |
aaagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaataatcagcatggtgggtctaggtggaatgggaaaaaccaccc |
478 |
Q |
| |
|
|| || || ||| ||| ||||||||| | | || ||| |||| | | || |||||||||||||| || ||| |||| || ||||| |||||||||| |
|
|
| T |
8455236 |
aaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggttccaataatcagcatagtcggtttaggagggatgggtaaaaccaccc |
8455137 |
T |
|
| Q |
479 |
ttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctgggtctatgtttcggaaactttcaatgttgttggacttaccaa |
578 |
Q |
| |
|
||||| | |||||||||||| |||||| ||| || | || |||||||| ||||| |||||||||||||| ||| |||| ||||||||||||| ||||| |
|
|
| T |
8455136 |
ttgctaagcttgtgtacaatgacaacaagataaaggagcattttgaacttaaagcatgggtctatgtttcagaatcttttgatgttgttggactcaccaa |
8455037 |
T |
|
| Q |
579 |
agcaatt |
585 |
Q |
| |
|
||||||| |
|
|
| T |
8455036 |
agcaatt |
8455030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 281 - 585
Target Start/End: Original strand, 6479331 - 6479635
Alignment:
| Q |
281 |
gtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaa |
380 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||| |||||||||| || ||| || | |||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
6479331 |
gtgctagtaatgaaggcttagtcagttggaaaccttcaaaaagattgtcatctacggctctcgtggatgagtccagcatatatggcagagatgttgacaa |
6479430 |
T |
|
| Q |
381 |
agaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaataatcagcatggtgggtctaggtggaatgggaaaaaccaccctt |
480 |
Q |
| |
|
|| ||| | | ||||||||||||| | | || || ||| | || || ||||||||||| || ||| |||| || ||||| |||||||||||| |
|
|
| T |
6479431 |
ggaagaacttatcaaatttttacttgcaggcaatgacagtggaacccaggttccgataatcagcatagttggtttaggagggatggggaaaaccaccctt |
6479530 |
T |
|
| Q |
481 |
gctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctgggtctatgtttcggaaactttcaatgttgttggacttaccaaag |
580 |
Q |
| |
|
||| | ||||||||||| ||||||| ||| || |||| |||||||| ||||| |||||||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
6479531 |
gctaagcttgtgtacaacaacaacaagatagaggaacattttgaacttaaagcatgggtctatgtttcagaatcttatgatgttgttggactcaccaaag |
6479630 |
T |
|
| Q |
581 |
caatt |
585 |
Q |
| |
|
||||| |
|
|
| T |
6479631 |
caatt |
6479635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 6553939 - 6554091
Alignment:
| Q |
433 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
532 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| ||||||||||||||| | ||||||||||| |||||| ||| |||| || |||||||| |||| |
|
|
| T |
6553939 |
ccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaag |
6554038 |
T |
|
| Q |
533 |
cctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaatt |
585 |
Q |
| |
|
| |||||||||||||| ||| ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
6554039 |
catgggtctatgtttcagaatctttcgatgtttttggactcaccaaagcaatt |
6554091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 433 - 585
Target Start/End: Complemental strand, 6736518 - 6736366
Alignment:
| Q |
433 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
532 |
Q |
| |
|
|||||||| ||||| |||||| |||| || ||||| ||||||||||||||| | ||||||||||| |||||| ||| |||| || |||||||| |||| |
|
|
| T |
6736518 |
ccaataattagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaag |
6736419 |
T |
|
| Q |
533 |
cctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaatt |
585 |
Q |
| |
|
| |||||||||||||| ||| ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
6736418 |
catgggtctatgtttcagaatctttcgatgtttttggactcaccaaagcaatt |
6736366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 280 - 585
Target Start/End: Complemental strand, 8590410 - 8590105
Alignment:
| Q |
280 |
tgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgaca |
379 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| ||| |||||| ||| || |||| || | |||||||| |||||||||||||| ||||||| ||| | |
|
|
| T |
8590410 |
tgtgctagtaacgaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctcttgtggatgagtcgagcatatatggtagagatgttgata |
8590311 |
T |
|
| Q |
380 |
aagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaataatcagcatggtgggtctaggtggaatgggaaaaaccaccct |
479 |
Q |
| |
|
| | || ||| ||| ||||||||| | | || ||| |||| | || || |||||||||||||| || ||| |||| || ||||| ||||||||||| |
|
|
| T |
8590310 |
agaaaaaactaatcaagtttttacttgcaggcaatgatagtggcaaccgcgttccaataatcagcatagtcggtttaggagggatggggaaaaccaccct |
8590211 |
T |
|
| Q |
480 |
tgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctgggtctatgtttcggaaactttcaatgttgttggacttaccaaa |
579 |
Q |
| |
|
|||| | ||||||||||| |||||| ||| | | || ||||| || ||||| |||||||||||||| ||| |||| ||||||||||||| |||||| |
|
|
| T |
8590210 |
tgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtctatgtttctgaatcttttgatgttgttggactcaccaaa |
8590111 |
T |
|
| Q |
580 |
gcaatt |
585 |
Q |
| |
|
|||||| |
|
|
| T |
8590110 |
gcaatt |
8590105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 318 - 600
Target Start/End: Original strand, 8568334 - 8568616
Alignment:
| Q |
318 |
aaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagat |
417 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||| |||||||||| ||||||| ||| ||| | || ||| ||| | ||| |||| |||| ||| |
|
|
| T |
8568334 |
aaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgat |
8568433 |
T |
|
| Q |
418 |
gctggcgatcgtgtaccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaac |
517 |
Q |
| |
|
| |||| | | ||| |||| || || |||||||||||||| ||||| || ||||||||||||| |||||| |||||| || ||| ||| |||| | |
|
|
| T |
8568434 |
ggtggcaaccatgtgagcgtaataagtattgtgggtctaggtgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagc |
8568533 |
T |
|
| Q |
518 |
agtttgaactaaaagcctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaattttgcggtcatttcat |
600 |
Q |
| |
|
| |||||||| ||||| |||||| ||||||| ||| |||| ||||||||||||| |||||| ||||| | ||||||||||| |
|
|
| T |
8568534 |
aatttgaacttaaagcttgggtccatgtttcagaatcttttgatgttgttggactcaccaaaacaattctcaggtcatttcat |
8568616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 433 - 585
Target Start/End: Complemental strand, 6947797 - 6947645
Alignment:
| Q |
433 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
532 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| ||||||||||||||| | |||||||||||| |||||| ||| || | || ||||| || ||| |
|
|
| T |
6947797 |
ccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaatgacaacaagatagaggagcattttgaccttaaaa |
6947698 |
T |
|
| Q |
533 |
cctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaatt |
585 |
Q |
| |
|
| |||||||| ||||| ||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
6947697 |
catgggtctacgtttcagaatcttttgatgttgttggactcaccaaagcaatt |
6947645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 436 - 584
Target Start/End: Original strand, 6448286 - 6448434
Alignment:
| Q |
436 |
ataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcct |
535 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| || ||||| ||||| | |||||||||||| |||||||||| || | || |||||||| ||| | | |
|
|
| T |
6448286 |
ataatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatctt |
6448385 |
T |
|
| Q |
536 |
gggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaat |
584 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
6448386 |
gggtctatgtttcagaatattttgatgttgttggactcaccaaagcaat |
6448434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 8455609 - 8455513
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
8455609 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatt |
8455513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 6736945 - 6736849
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||| | ||||||||||| ||||| |||||||||||| |
|
|
| T |
6736945 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatt |
6736849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 8590684 - 8590588
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| |||| |||| ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
8590684 |
agcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
8590588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 6553512 - 6553608
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6553512 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt |
6553608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 6479056 - 6479151
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagat |
104 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| | | |||||||||||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
6479056 |
agcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagat |
6479151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 6519246 - 6519332
Alignment:
| Q |
19 |
aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
6519246 |
aagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
6519332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 5281586 - 5281508
Alignment:
| Q |
29 |
aaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc |
107 |
Q |
| |
|
||||| |||| || ||||||||||||| |||||||||||||| ||| ||||| ||||| ||| |||| ||||||||||| |
|
|
| T |
5281586 |
aaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgc |
5281508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 6948193 - 6948128
Alignment:
| Q |
40 |
gtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6948193 |
gtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatt |
6948128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 6259795 - 6259731
Alignment:
| Q |
348 |
tgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgaca |
412 |
Q |
| |
|
|||||| | ||||||||| ||||| |||| ||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
6259795 |
tgaatctatcatatatggtagagaacgtgaaaaagaggaaataatcaaatttttactttcagaca |
6259731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 6837991 - 6838087
Alignment:
| Q |
10 |
gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattg |
106 |
Q |
| |
|
|||||||||||| | ||||||| | | | |||||||||||| ||| | |||| ||||||| || ||||||| ||||||| | ||||||||||||| |
|
|
| T |
6837991 |
gcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattg |
6838087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 6978 - 7130
Alignment:
| Q |
433 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
532 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| ||||||||||||||| | ||||||||||| |||||| ||| |||| || |||||||| |||| |
|
|
| T |
6978 |
ccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaaagacaacaagataaagaagcattttgaacttaaag |
7077 |
T |
|
| Q |
533 |
cctgggtctatgtttcggaaactttcaatgttgttggacttaccaaagcaatt |
585 |
Q |
| |
|
| |||||||||||||| ||| ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
7078 |
catgggtctatgtttcagaatctttcgatgtttttggactcaccaaagcaatt |
7130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 6551 - 6647
Alignment:
| Q |
9 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
105 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6551 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt |
6647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 434 - 545
Target Start/End: Original strand, 6572800 - 6572911
Alignment:
| Q |
434 |
caataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagc |
533 |
Q |
| |
|
||||||||||||| |||||| | ||||| ||||| || |||||||||||||| ||||| |||||| || | | |||| ||||||||||||| || ||||| |
|
|
| T |
6572800 |
caataatcagcatagtgggtttgggtgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatggagaaacagtttgaccttaaagc |
6572899 |
T |
|
| Q |
534 |
ctgggtctatgt |
545 |
Q |
| |
|
|||||| |||| |
|
|
| T |
6572900 |
ttgggtccatgt |
6572911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 6572403 - 6572500
Alignment:
| Q |
10 |
gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc |
107 |
Q |
| |
|
||||||||||| || ||||||| | || ||||||||| ||||||| | ||| ||||||| || ||||||| ||||||| | |||||||||||||| |
|
|
| T |
6572403 |
gcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgc |
6572500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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